Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02720 603 / 0 Class I glutamine amidotransferase-like superfamily protein (.1) AT2G38860 315 / 8e-105 YLS5 Class I glutamine amidotransferase-like superfamily protein (.1.2.3) AT3G54600 305 / 5e-101 Class I glutamine amidotransferase-like superfamily protein (.1) AT1G53280 64 / 7e-11 AtDJ1B DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) AT3G14990 64 / 7e-11 AtDJ1A DJ-1 homolog A, Class I glutamine amidotransferase-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G076000 [exp] 801 / 0 AT3G02720 608 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143940 [exp] 737 / 0 AT3G02720 609 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G075900 [exp] 728 / 0 AT3G02720 562 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143880 [exp] 691 / 0 AT3G02720 650 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.011G111900 [exp] 56 / 2e-08 AT1G53280 581 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010964 [exp] 621 / 0 AT3G02720 635 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10031360 [exp] 616 / 0 AT3G02720 624 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10014721 [exp] 355 / 2e-120 AT2G38860 490 / 2e-173 Class I glutamine amidotransferase-like superfamily protein (.1.2.3) Lus10003083 [exp] 132 / 1e-36 ND 173 / 2e-52 Lus10003084 [exp] 112 / 1e-26 AT2G38840 650 / 0.0 Guanylate-binding family protein (.1) Lus10009525 [exp] 50 / 3e-06 AT1G53280 562 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1) Lus10020345 [exp] 48 / 8e-06 AT1G53280 564 / 0.0 DJ-1 homolog B, Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0014 [poplar] [flax] Glutaminase_I PF01965 [poplar] [flax] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Potri.004G076200.1 pacid=42794155 polypeptide=Potri.004G076200.1.p locus=Potri.004G076200 ID=Potri.004G076200.1.v4.1 annot-version=v4.1 ATGGCTAATTGCAAGCCACAGAAGAAAGTTCTATTGTTATGTGGGGATTACATGGAAGATTATGAGGCTATGGTTCCATTTCAATCCTTGCAGGCTTATG GAATAGCAGTTGATGCTGTTTGTCCTGGAAAGAAAGCTGGTGATTATTGCCGCACTACAGTTGGGGACTCTGGTGCCTATCATGGATATCAGACTTATAC TGAGAAGCCTGGACACAACTTTAGTCTCAATGCAACTTTCGATGAAGTTGATTTCAGCAAATATGATGCGCTTGTTATACCAGGAGGAAGGGCTCCAGAA TATCTTGCCATAAATGAATCTGTGTTAAATTGTGCGAGGCAATTTTCCGATTCAGGAAAGCTGATTGCTGCTATTTGCCATGGGCCATTGATCTTGGCAG CTGCAGGCTTATTAAAAGGTCGGAAGTGCACTGCATACCATGCTCTGAGACCTGTTCTCATCGATGCCGGTGCTCATTGGATTGAACCCAAAACCATGAT GGATTGTGTTTCTGATGGCAATCTCATTACTGGAGTTATATATAAGGCGCATCCTGAGTACATCCAGCTTGTTGTGAAGGCACTGGGAGGCAAGATAGCT GGTTCAGATAAAAGGATTCTGTTTCTCTGTGGGGATTTCATGGAAGATTATGAGGTTACTGTTCCTCTTCAATCCCTTCAAGCTCTTGGGTGCCACGTTG ATGCAGTTTGCCCCAAGAAGAAGGCTGGGGATTTCTGCCCGACTGCAGTCCATGACTTTGAAGGTGACCAAACATACACTGAGAAGCCAGGCCATAATTT CATTCTAACAGCTTCCTATGAAGGCTTGGATGCCTCGAGTTACGACGCTCTCGTCATCCCTGGAGGCCGGTCTCCAGAATATTTGGCACTGGATGAGACA GTGATTGCCTTGGTGAAGAAATTCATGCAATCAAAGAAGCCAGTTGCCTCTATTTGTCACGGACAGCAGATCCTAGCTGCTGCGGGAGTTCTCAAGGGAA GAAAGTGCACCGCATACCCTGCTGTGAAGCTGAACGTCGTCTTGGGAGGGGCAACATGGCTAGAACCGGATCCAATCGATCGTTGCTACACCGACGAAAA CTTGGTTACCGGAGCCGCATGGCCAGGGCACCCTCAGTTTGTGTCTCAGCTGATGGCCTTACTTGGTATCCGAGTGTCATTCTAG
AA sequence Show only first row Show all	>Potri.004G076200.1 pacid=42794155 polypeptide=Potri.004G076200.1.p locus=Potri.004G076200 ID=Potri.004G076200.1.v4.1 annot-version=v4.1 MANCKPQKKVLLLCGDYMEDYEAMVPFQSLQAYGIAVDAVCPGKKAGDYCRTTVGDSGAYHGYQTYTEKPGHNFSLNATFDEVDFSKYDALVIPGGRAPE YLAINESVLNCARQFSDSGKLIAAICHGPLILAAAGLLKGRKCTAYHALRPVLIDAGAHWIEPKTMMDCVSDGNLITGVIYKAHPEYIQLVVKALGGKIA GSDKRILFLCGDFMEDYEVTVPLQSLQALGCHVDAVCPKKKAGDFCPTAVHDFEGDQTYTEKPGHNFILTASYEGLDASSYDALVIPGGRSPEYLALDET VIALVKKFMQSKKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVLGGATWLEPDPIDRCYTDENLVTGAAWPGHPQFVSQLMALLGIRVSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076200 [exp]	0	1
AT3G02720			Class I glutamine amidotransfe...		Potri.004G075900 [exp]	1.41	0.9775
AT2G14960		GH3.1	Auxin-responsive GH3 family pr...		Potri.007G050300 [exp]	2.00	0.9111	GH3-1
AT3G02720			Class I glutamine amidotransfe...		Potri.004G076000 [exp]	2.00	0.9659
AT5G45960			GDSL-like Lipase/Acylhydrolase...		Potri.011G061900 [exp]	3.46	0.9354
AT5G17800	MYB	ATMYB56	myb domain protein 56 (.1)		Potri.013G067000 [exp]	5.00	0.8499
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156300 [exp]	8.83	0.8758
AT1G29520			AWPM-19-like family protein (....		Potri.001G354500 [exp]	9.79	0.9015
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156800 [exp]	12.24	0.8792
AT1G28220		ATPUP3	purine permease 3 (.1)		Potri.005G160300 [exp]	12.72	0.8830	PUP1.1
AT5G57340			unknown protein		Potri.018G090000 [exp]	13.49	0.8709

Compare expression of checked genes

Potri.004G076200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.