Plant FIBer expression Database

Potri.004G076600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02710 696 / 0 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010958
[exp]
739 / 0 AT3G02710 780 / 0.0 ARM repeat superfamily protein (.1)
Lus10031364
[exp]
731 / 0 AT3G02710 772 / 0.0 ARM repeat superfamily protein (.1)
Lus10026721
[exp]
163 / 4e-48 AT3G02710 158 / 5e-47 ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08216 CTNNBL Catenin-beta-like, Arm-motif containing nuclear
Representative CDS sequence
>Potri.004G076600.1 pacid=42793996 polypeptide=Potri.004G076600.1.p locus=Potri.004G076600 ID=Potri.004G076600.1.v4.1 annot-version=v4.1
ATGGAAATCGCCACCGCGCGCAGCCACAACCCTAAACGGAAACGCGACGCCACCTCTCCTCCCCCACCATACTCCAACGGTGAAACCACCACCGAAGAAA
TCGACCTCTCTCTCCTCGACGCAATAGAAAAATCCCAATCCTTGTCAAAGTCCCAACCCATAGAAACCCTAGATCCCAAAACCCTAAAAAAACTAATCCT
CTCCTTCGAACGCAAATACAAAGAAAACATCGAGTCCCGCCTCAAATACCCTGACCAGCCGGAAAAATTCGCCGATTCCGAAATTGACCTCCATAACGAG
CTCCACAAACTCAAAATACTCTCCTCTGCACCGGAACTTTACCCCGATTTAATAAACCTGAACACCATTCCTTCCGTTTTATCCCTATTATCACATGAAA
ATACTGATATTGCCATCGATGTTATTCAGTTATTACAAGACCTAACCGACGAGGATGTAGTGGAAATGAGCAACGAGAACGAAGAGGAGTCGATGAAGGC
TCTGGTTAACACGCTTATCGAGAACAATGTGTTGGAATTGCTAGTGCAGAATTTGCAGAGGTTGTCGGATTCCGATGATCAGGATGAAATGGCGGCGGTT
TATAACACGTTGGCGACGGTGGAGAACATGATTGAGGTGGAGCCGAAGGTGGCGGAGATGATTTGTGAGAAAACGAGGGTTTTGAAGTGGTTGTTGGGGA
AGTTGAAGGTGAGGGAGTTTGATAGTAATAAGCAGTATGCGGCGGAGATTTTGTCGATTTTGTTGCAGAATAGTGAGGCGAATCAGAAGAAATTGGGGCA
AATGAACGGGGTTGATGTGGTTTTGCAGGCGGTTGCGATGTATAAGAGTAAGGACCCGAAGAGTGGGGATGAGGAGGAAATGGTGGAGAATTTGTTTGAT
TGTCTGTGTTGTTTGTTAATGCCTTTGGAGAACAAGGAGAGGTTTGTGAAGGCAGAGGGAGTGGAGTTGATGATTATTATTATCAAACAGAAGAAATTGG
CTTATGGGTCTGCGATTAGAGCGCTTGATTTTGCTATGACTAATTATCCGCCGGCATGTGAGAGGTTTGTTGATGTTTTGGGGCTGAAAACTGCTTTTGC
TGCCTTCATGGGTAAGATTCCCATGAGCAAGAAGAATAAGAAAGAACGATATCAAGAGGAGTTAGAAGAGCGTGTTATTTCCCTAATTGCATCATTATTT
GGTGGAATTTTGAGAGGTTCAAGAAGGGAGAGACTGCTAAGTAAATTTGTGGAAAATGAGTGTGAGAAGATAGACCGCCTTATGGAACTCTATATAAGAT
ATTCAGATAGAGTAAAAGAAGAGACTAAACGAATGGATGAGCTTGAATTGGATGATCTGGAGATGGATGGAGATGAAAGATATAATCGAAAACTAGAATC
TGGACTGTACACCCTTCAGTCGATAGCCATTATTCTGGGCCATCTTTGGTGCTCCGAGCACCCTCGAATGAGAGCAAGGATTGAACTATTATTGAAGCAG
CAAAAGCTTACTAAGAGCGATGTTAAGGATATACTTCTGGAATATCATGATAACATTGGTGACCTCGATGGACCTGAAGAGAAGGAGCGAGTGCAAGCAA
GAGTTCTGAAATTTATATCAGCCTTCGAACTTTCATAG
AA sequence
>Potri.004G076600.1 pacid=42793996 polypeptide=Potri.004G076600.1.p locus=Potri.004G076600 ID=Potri.004G076600.1.v4.1 annot-version=v4.1
MEIATARSHNPKRKRDATSPPPPYSNGETTTEEIDLSLLDAIEKSQSLSKSQPIETLDPKTLKKLILSFERKYKENIESRLKYPDQPEKFADSEIDLHNE
LHKLKILSSAPELYPDLINLNTIPSVLSLLSHENTDIAIDVIQLLQDLTDEDVVEMSNENEEESMKALVNTLIENNVLELLVQNLQRLSDSDDQDEMAAV
YNTLATVENMIEVEPKVAEMICEKTRVLKWLLGKLKVREFDSNKQYAAEILSILLQNSEANQKKLGQMNGVDVVLQAVAMYKSKDPKSGDEEEMVENLFD
CLCCLLMPLENKERFVKAEGVELMIIIIKQKKLAYGSAIRALDFAMTNYPPACERFVDVLGLKTAFAAFMGKIPMSKKNKKERYQEELEERVISLIASLF
GGILRGSRRERLLSKFVENECEKIDRLMELYIRYSDRVKEETKRMDELELDDLEMDGDERYNRKLESGLYTLQSIAIILGHLWCSEHPRMRARIELLLKQ
QKLTKSDVKDILLEYHDNIGDLDGPEEKERVQARVLKFISAFELS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G02710 ARM repeat superfamily protein... Potri.004G076600
[exp]
0 1
AT5G27650 Tudor/PWWP/MBT superfamily pro... Potri.005G026800
[exp]
3.16 0.9075
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.012G093000
[exp]
5.65 0.8850
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.015G090200
[exp]
6.00 0.9020 ELF5.2
AT4G09980 EMB1691 EMBRYO DEFECTIVE 1691, Methylt... Potri.015G147200
[exp]
6.48 0.8953
AT2G02160 C3HZnF CCCH-type zinc finger family p... Potri.010G098200
[exp]
9.16 0.8643
AT5G27650 Tudor/PWWP/MBT superfamily pro... Potri.013G018700
[exp]
9.38 0.8940
AT5G17930 MIF4G domain-containing protei... Potri.013G061400
[exp]
10.72 0.8630
AT1G77180 SKIP chromatin protein family (.1.2... Potri.006G163700
[exp]
10.95 0.8765
AT1G77030 hydrolases, acting on acid anh... Potri.005G185900
[exp]
12.36 0.8813
AT5G18440 AtNUFIP nuclear FMRP-interacting prote... Potri.008G012250
[exp]
12.40 0.8869

Potri.004G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.