Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04010 122 / 8e-33 F-box family protein (.1) AT5G03920 50 / 3e-07 unknown protein AT4G24210 47 / 1e-06 SLY1 SLEEPY1, F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G077301 [exp] 325 / 3e-113 AT5G04010 54 / 9e-09 F-box family protein (.1) Potri.006G044801 [exp] 199 / 7e-63 AT5G04010 114 / 8e-30 F-box family protein (.1) Potri.014G022100 [exp] 47 / 3e-06 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.002G122300 [exp] 45 / 1e-05 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031031 [exp] 154 / 2e-45 AT5G04010 106 / 4e-27 F-box family protein (.1) Lus10035421 [exp] 89 / 1e-20 AT5G04010 58 / 1e-09 F-box family protein (.1) Lus10042637 [exp] 41 / 0.0003 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Potri.004G076800.1 pacid=42796069 polypeptide=Potri.004G076800.1.p locus=Potri.004G076800 ID=Potri.004G076800.1.v4.1 annot-version=v4.1 ATGTCTCTCACGAAGCTCAAACGCTCTTCTAGTCAAGAAAATATCCATCATGTTTCTGTCAAAAGACTAAAACTCTTCAAGAATAAACTAGTATCCTATT CGCCATCGCCAGCTTGGGAGCTTCTTTTTCTAGTGGCTCAGTATCTAGACCCTAAATCCCTTGCTACTGCTTCTTGTGTGTCCAAATCATGGTTGGAGTC ATTTTCCTCTGAGGATATTTGGCGGCCGATATGCTCTGCTCACTACCCTTCTGTCTACAACCTCAAACACGTAGACCCAGCTGTCTCTTGCCACCGCCTT TACGGTATTGCCTCCACGGCAGCCTCCAAGCTCCAGCTTCAAAAGCCAATAAAACCCCACCTGCCCCTAAATGACCTCCTCTTCGTCATCAATGCAAGGA CCGGAGAGTCTTCCACTTTATTCACCCTATCGAAACCATGCGATGAACTCCAGGTAGATCCTAATGGGATATTCAAGTTCGCTGTCGACATAGATCTTGA GTCTTCACTGAAAAAAGAAGCGATACGGGAGATAAAAGTGACATGGAACGTTGTGTTGAGAGGTTGGAAAGATGTATTTAATATGATGGAATCTTGTAGT GGAAAGGCGAGCCTTGTTCCGGAGGCAGAAGACTTGTTTTCCAAGGAGCTTCCATTGCCGGGGTGTTGCTCAAACATGGTCACCGCAAGCAGCCTTGTTG CTGAGATAAAGTTGGGATTTTGCAGTGAGAATTGTATTGATGAGGAGGAGGGTACAGAGGATGACGGCAAGTTCAAGAGAGGAAAGTTGAGTTTGGCCAT CATGAATACAAAACATTGGAGGTACCTAAGCATGGATGATGCTCTGAGACATTTGCAGCACTTTTTGCTGCCTTGCGATGCCTAA
AA sequence Show only first row Show all	>Potri.004G076800.1 pacid=42796069 polypeptide=Potri.004G076800.1.p locus=Potri.004G076800 ID=Potri.004G076800.1.v4.1 annot-version=v4.1 MSLTKLKRSSSQENIHHVSVKRLKLFKNKLVSYSPSPAWELLFLVAQYLDPKSLATASCVSKSWLESFSSEDIWRPICSAHYPSVYNLKHVDPAVSCHRL YGIASTAASKLQLQKPIKPHLPLNDLLFVINARTGESSTLFTLSKPCDELQVDPNGIFKFAVDIDLESSLKKEAIREIKVTWNVVLRGWKDVFNMMESCS GKASLVPEAEDLFSKELPLPGCCSNMVTASSLVAEIKLGFCSENCIDEEEGTEDDGKFKRGKLSLAIMNTKHWRYLSMDDALRHLQHFLLPCDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04010			F-box family protein (.1)		Potri.004G076800 [exp]	0	1
AT5G28460			Pentatricopeptide repeat (PPR)...		Potri.014G090400 [exp]	1.41	0.9454
					Potri.003G088350 [exp]	3.16	0.9158
AT5G04010			F-box family protein (.1)		Potri.004G077301 [exp]	9.89	0.8842
					Potri.019G042001 [exp]	11.74	0.9053
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	11.83	0.8759
AT5G64470		TBL12	TRICHOME BIREFRINGENCE-LIKE 12...		Potri.001G286100 [exp]	13.30	0.8018
AT1G79510			Uncharacterized conserved prot...		Potri.008G083400 [exp]	13.63	0.8361
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Potri.006G178900 [exp]	14.07	0.8782
AT1G04840			Tetratricopeptide repeat (TPR)...		Potri.001G316500 [exp]	19.62	0.8890
AT1G26800			RING/U-box superfamily protein...		Potri.010G168300 [exp]	21.90	0.8891

Compare expression of checked genes

Potri.004G076800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.