Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65810 827 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G65780 759 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 623 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 564 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 561 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 556 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 537 / 1e-178 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 364 / 4e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 196 / 6e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 193 / 4e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G077600 [exp] 1925 / 0 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 711 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 707 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 697 / 0 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 671 / 0 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140200 [exp] 668 / 0 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 668 / 0 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077650 [exp] 659 / 0 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140300 [exp] 655 / 0 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 649 / 0 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035774 [exp] 494 / 4e-159 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 486 / 2e-156 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 480 / 5e-153 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 201 / 2e-52 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 162 / 6e-41 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 163 / 2e-40 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10038906 [exp] 161 / 3e-40 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 161 / 6e-40 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003960 [exp] 160 / 7e-40 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13245 [poplar] [flax] AAA_19 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.004G077500.5 pacid=42794020 polypeptide=Potri.004G077500.5.p locus=Potri.004G077500 ID=Potri.004G077500.5.v4.1 annot-version=v4.1 ATGGACGCGAGAACTGATCATGTGAAGAGGGAAAAGGTCAAGGGTAGAGGGTTACTAGATTCAGTGTTTTCTTGGTCTATTCAAGATGTGCTCAATGAGG ATCTTTACAAAGACCAGAAGCGGAAGACAAAATCTCACTCCAAAAAATTTATTACAAACTCCTTCATGTCAACAGCTCATTACATGAAAGCATTCATTAC ACCCCTACATGTGGAAACACATGCTGATTTGCTTTCAAGTACAGAATCACTGGCTGGAGCACCAACTTATAGAATACTTCGTGTTAGAAAATCTAAGGAT TACAAGCCACCTAAGGACTTGTTTTACGAAATTTCGATGGAAGAAACCAGAGGTGGATATGTGCCTTGGGTTGGGGATCTTATAGCCCTGACAAATGTGA AACTGAAGTGCATTGATGATTTAAGGAAGACCCAGCAATCCTATCATGTTGCTTTCGTTCATGCCGTGAAAAGGGGAAATCGTTTGACAGCCTCGATTCT GTCTTCGAAGCCCATAGTGGATGAAGAAGGCTTGAAGAATGGAACACTCTTTGCTGTTCGTTTGATAAATCTGACGACAAATTTGCGAATATGGAGATCG TTGCACTTGGAACTCGAAGGGAGGAACATGAACGTTATTGAGAAAGTGCTGCAAAATAATTTCAATGATGATGGAGATTGTACTATCTGCTCTTCTCGTA AAAAAAGTGATGCTGCCTCTGCCTGCATAAGGGATACATTACAGTCTTCTAATTTAAACAGCTCGCAAGAAGCTGCGGTTTTAAGCTGTATTCACACAGC CAGATGCTGGCATCAGTACACTGTCAAATTAGTACAGGGTCCTCCAGGAACTGGGAAAACAAAGACAGCTAGTTGCTTATTACACGCACTATTAAGAATG AAATGCAGAACACTTACATGTGCTCCAACTAACATTGCAGTGGTAGAAGTTGCAGCTCGTGTCGTGAGTACAGTTGCCGATTTAGTTGAATATGAAACTT ATGGCATGGGAGACATAATTCTGTTTGGGAATTGGGAGAGAATGAAGGTTGATGGTGATCAGAATGACCTTCTTCATGTATTTCTTGATCATCGTGCTGA TATACTTGAGAAGAGCTTTGATCCATCAACTGGCTGGAAACACATTTTAGCTTTATTGATAAGTTTACTTGAAGACTCTGAAGCGCAATACCATTTGTAC TTGCAGGATAACATGGGAAAGGAAGGACTTTTGACTTGTGAGCAATTCGTATGGAAAAGATTTGATTTCTCCGGAAAGCAATTAAAGTTCTGTATTGTGA ATTTGTATACACACTTACCGACTACTTTGATTTCATTACAAGTGATGAGGATCATGACCAGGGCTCTTGATTTGATGACATCACTTGAAACCTTGTTGCT TAGTCTCAGTGCTGCCGATGAAGGTTTAAAGCAGATTCTAGGGGAAAATGAAGATGAAGAAAGAAAACTTCATAATCGTATAAAGTTGATAAATGAAAAA AGGGAATGCCTCAATACTCTACGCTTACTTTCTCTAAAATTTCAGGTTCCAGAATTCGCTGATAAAAATGCTATTGAGAAATTCTGCTTATCAAATGCAT GCCTGATTTTCTGTACCGTGTCAAGCTCTGCCAGGCTGCATAGTATAAGAATGGCACCTCTGCGTTGCTTGGTGATTGACGAAGCTGCTCAGCTCAAAGA ATGTGAATCAACCATCCCCTTACAACTCTTCGGCCTTCACCATGCTATTCTCATAGGAGATGAACGGCAATTGCCTGCCATCGTTAATAGCGAGATTTCA GGGAAGGCTGGTTTTGGTAGAAGTTTGTTTGAGAGGCTCGTAAAGCTGGGATGCAAGAGCCATCTTCTAAACATTCAATATCGAATGCATCCATCAATAA GCTTATTTCCGAATACGGAGTTCTATGGCAGCCAGGTTTTGGATGCGCCAAACGTCAAAGAAACTGGCTACAGGAGACGGTTTCTCCAAGGAGACATGTT TGAATCCTACTCTTTCATAAATTTAGCCCATGGAAAAGAGGAATTTGTTGAGCAACGGAGTTTCAAAAATACAGTCGAGGCTGCTGCTGCTGCTGATATA GTTGGGAGACTTTTCAAAGATATTAATGGCACTGGGCAGAAGGTTAGCATAGGTATCATATCACCATACCAGGCTCAAGTTCATGCAATTCAAGAGAAGA TTGGGAAATTCATTTCAGACTCTGACAGTGCCTTTTCTGTAAGCGTTGGCACGGTTGATGGTTTTCAGGGTGGAGAGGAGGATCTGATAATTATCTCTAC TGTTCGAAGCAATGAGAACGGATCGGTGGGTTTTGTTTCGAATCCTCAACGAGCAAATGTGGCGCTGACTCGTGCAAGGTTCTGCCTCTGGATTTTAGGA AATGAAGCAACTTTAGTTAGGAGTGGCTCTATTTGGAAGAAGATAGTCAACGATGCGAAGCATCGGCAATGCTTCTATAATGCTGAAGAGGATGAGAGTT TGGATCAGGCCATTACAGAAAGCTTGATCGAGCATGGCCGACTTGATGTTCTGCTACGAACTCACTCCCCATTGTTCCGGAATGCAAGATGGATGGTTTT TTTCAGTGATGATTTTCGGAGATCCGTGGCGAGAGTTAAGAATGTCAGAATCTGTAAGGAAGTGCTTTCCCTATTAGCCAAGCTTTCAAATGGTTGGCGT CAGCGTCAGTCTCGCAAGAAGAGAAGCCTAATGGTTCCCAGTGGCATTTCTTCTCCACTGATAGAGCAGTATAATGTTAGTGGACAGCTAAATATGGTCT GGACTGTGGACATTCTGCAGGAAAACTCATTCTGGATTCATGTTTTGAAGGTTTGGGATATTTTACCATCATCTGATATACCAAAACTAGCAATGAGTCT CGACACCTTGTTTTGGAATTACACGGAGGAGCAGATGAATCGCTGCTTATACAAATGCATGGAGGGGAATTTGGTTGTTCCAATGAGATGGACAGTGGAC TCGTGTAGTGATCGTCAGGGCAGCTGCGGCGATGCCGATGCTGTGCAGCTGCCGAAATCACTGGCATCACTCTGTCTAGAGGATGAACCAGGCACAACGG GTAAAGCTGCCAGAAAACAATGGAGGCTCAAAAGGAATTAG
AA sequence Show only first row Show all	>Potri.004G077500.5 pacid=42794020 polypeptide=Potri.004G077500.5.p locus=Potri.004G077500 ID=Potri.004G077500.5.v4.1 annot-version=v4.1 MDARTDHVKREKVKGRGLLDSVFSWSIQDVLNEDLYKDQKRKTKSHSKKFITNSFMSTAHYMKAFITPLHVETHADLLSSTESLAGAPTYRILRVRKSKD YKPPKDLFYEISMEETRGGYVPWVGDLIALTNVKLKCIDDLRKTQQSYHVAFVHAVKRGNRLTASILSSKPIVDEEGLKNGTLFAVRLINLTTNLRIWRS LHLELEGRNMNVIEKVLQNNFNDDGDCTICSSRKKSDAASACIRDTLQSSNLNSSQEAAVLSCIHTARCWHQYTVKLVQGPPGTGKTKTASCLLHALLRM KCRTLTCAPTNIAVVEVAARVVSTVADLVEYETYGMGDIILFGNWERMKVDGDQNDLLHVFLDHRADILEKSFDPSTGWKHILALLISLLEDSEAQYHLY LQDNMGKEGLLTCEQFVWKRFDFSGKQLKFCIVNLYTHLPTTLISLQVMRIMTRALDLMTSLETLLLSLSAADEGLKQILGENEDEERKLHNRIKLINEK RECLNTLRLLSLKFQVPEFADKNAIEKFCLSNACLIFCTVSSSARLHSIRMAPLRCLVIDEAAQLKECESTIPLQLFGLHHAILIGDERQLPAIVNSEIS GKAGFGRSLFERLVKLGCKSHLLNIQYRMHPSISLFPNTEFYGSQVLDAPNVKETGYRRRFLQGDMFESYSFINLAHGKEEFVEQRSFKNTVEAAAAADI VGRLFKDINGTGQKVSIGIISPYQAQVHAIQEKIGKFISDSDSAFSVSVGTVDGFQGGEEDLIIISTVRSNENGSVGFVSNPQRANVALTRARFCLWILG NEATLVRSGSIWKKIVNDAKHRQCFYNAEEDESLDQAITESLIEHGRLDVLLRTHSPLFRNARWMVFFSDDFRRSVARVKNVRICKEVLSLLAKLSNGWR QRQSRKKRSLMVPSGISSPLIEQYNVSGQLNMVWTVDILQENSFWIHVLKVWDILPSSDIPKLAMSLDTLFWNYTEEQMNRCLYKCMEGNLVVPMRWTVD SCSDRQGSCGDADAVQLPKSLASLCLEDEPGTTGKAARKQWRLKRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65810			P-loop containing nucleoside t...		Potri.004G077500 [exp]	0	1
AT4G13440			Calcium-binding EF-hand family...		Potri.019G026860 [exp]	1.00	0.9534
AT1G03670			ankyrin repeat family protein ...		Potri.013G134466 [exp]	4.00	0.9348
AT4G34880			Amidase family protein (.1)		Potri.004G171300 [exp]	7.34	0.9095
AT3G48770			DNA binding;ATP binding (.1)		Potri.012G103700 [exp]	9.27	0.8567
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116090 [exp]	13.07	0.8653
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.016G092600 [exp]	14.73	0.8762
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	15.96	0.9188
AT4G31980			unknown protein		Potri.003G208100 [exp]	18.73	0.8717
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G009900 [exp]	19.44	0.8637
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.010G050501 [exp]	21.84	0.9228

Compare expression of checked genes

Potri.004G077500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.