Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65810 843 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G65780 780 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 624 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 567 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 561 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 555 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 532 / 6e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 361 / 4e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 197 / 2e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 197 / 4e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G077500 [exp] 1922 / 0 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 938 / 0 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 718 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 716 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 708 / 0 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140501 [exp] 672 / 0 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140200 [exp] 669 / 0 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140300 [exp] 656 / 0 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077650 [exp] 652 / 0 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 667 / 0 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035774 [exp] 508 / 1e-164 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 490 / 4e-158 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 493 / 6e-158 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 201 / 1e-52 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 164 / 7e-41 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 162 / 3e-40 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10015030 [exp] 159 / 6e-40 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 160 / 2e-39 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 157 / 4e-39 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13245 [poplar] [flax] AAA_19 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.004G077600.1 pacid=42796329 polypeptide=Potri.004G077600.1.p locus=Potri.004G077600 ID=Potri.004G077600.1.v4.1 annot-version=v4.1 ATGGACAAGAGAACTGATCGTGTGAAGTGGGAAAAGGTCAAGGGTAGAGGGTTCCTAGATTTAGTGTTTTCTTGGTCTATTGAAGATGTGCTCAATAAGG ATCTTTACAAAGACCAGGTGGAGGAGATCCCAAACTCCTTCATGTCAACAGCTCATTACATGAAAGCATTCATTACACCCCTACACGTGGAAACACATGC TGATTTGCTTTCAAGTACAGAATCACTGGCTGGAGCACCAACTTATAGAATACTTCGTGTTAGAAAATCTAAGGATTACAAGCCACCTAAGGACTTGTTT TACGAAATTTCGATGGAAGAAACCAGAGGTGGATATGTGCCTTGGGTTGGGGATCTTATAGCCCTGACAAATGTGAAACTGAAGTGCATTGATGATTTAA GGAAGACCCAGCAATCCTATCATGTTGCTTTCGTTCATGCCGTGAAAAGGGGAAATCGTTTGACACCCTCGATTCTGTCTTCGAAGCCCATAGTGGATGA AGAAGGCTTGAAGAATGGAACACTCTTTGCTGTTCATTTGATAAATCTGATGACAAATTTGCGAATATGGAGATCGTTGCACTTGGAACTCGAAGGGAGG AACATGAACGTTATTGAGAAAGTGCTGCAAAATAATTTCAATGATGATGGAGATTGTACTATCTGCTCTTCTCGTAAAAAAAGTGATGCTGCCTCTGCCT GCATAAGGGATACATTACAGTCTTCTAATTTAAACAGCTCGCAAGAAGCTGCGGTTTTAAGCTGTATTCACACAGCCAGATGCTGGCATCAGTACACTGT CAAATTAGTACAGGGTCCTCCAGGAACTGGGAAAACAAAGACAGCTAGTTGCTTATTACACGCACTATTAAGAATGAAATGCAGAACACTTACATGTGCT CCAACTAACATTGCAGTGGTAGAAGTTGCAGCTCGTGTCGTGAGTACAGTTGCCGATTTAGTTGAATATGAAACTTATGGCATGGGAGACATAATTCTGT TTGGGAATTGGGAGAGAATGAAGTTTGATGGTGATCAGAATGACCTTCTTCATGTATTTCTTGATCATCGTGCTGATATACTTGAGAAGTGCTTTGATCC ATCAACTGGCTGGAAACGCATTTTAGCTTCATTGATAAGTTTACTTGAAGACTCTGAAGCGCAATACCATTTGTACTTGCAGGATAACATGGGAAAGGAA GGACTTTTGACTTGTGAGCAATTCGTATGGAAAAGATTTGATTTCTCCGGAAAGCAATTAAAGTTCTGTATTGTGAATTTGTATACACACTTACCGACTA CTTTGATTTCATTACAAGTGATGAGGATCATGACCAGGGCTCTTGATTTGATGACATCACTTGAAACCTTGTTGCTTAGTCTCAGTGCTGCCGATGAAGG TTTAAAGCAGATTCTAGGGGAAAATGAAGATGAAGAAAGAAAACTTCATAATCGTATAAAGTTGATAAATGAAAAAAGGGAATGCCTCAATACTCTACGC TTACTTTCTCTAAAATTTCAGGTTCCAGAATTCGCTGATAAAAATGCTATTGAGAAATTCTGCTTATCAAATGCATGCCTGATTTTCTGTACCGTGTCAA GCTCTGCCAGGCTGCATAGTATAAGAATGGCACCTCTGCGTTGCTTGGTGATTGACGAAGCTGCTCAGCTCAAAGAATGTGAATCAACCATCCCCTTACA ACTCTTCGGCCTTCACCATGCTATTCTCATAGGAGATGAACGGCAATTGCCTGCCATCGTTAATAGCGAGATTTCAGGGAAGGCTGGTTTTGGTAGAAGT TTGTTTGAGAGGCTCGTAAAGCTGGGATGCAAGAGCCATCTTCTAAACATTCAATATCGAATGCATCCATCAATAAGCTTATTTCCGAATACGGAGTTCT ATGGAAGGCAGGTTTTGGATGCGCCAAACGTCCAAGAAACTGGCTACAGGAGACGGTTCCTCCAAGGAGACATGTTTGAATCCTACTCTTTCATAAATAT AGCCCATGGAAAAGAGGAATTTGTTGAGAAACAGAGTTTCAAAAATACAGTCGAGGCTGCTGCTGCTGCTGATATAGTTGGGAGACTTTTCAAAGATATT AATGGCACTGGGAAGAAGGTTAGCATAGGTATCATATCACCATACCAGGCTCAAGTTCATGCAATTCAAGCGAAGATTGGGAAATTCATTTCAGACTCTG ACAGTGCCTTGTCTGTAAGCGTTGGCACGGTTGATGGTTTTCAGGGTGGAGAGGAGGATCTGATAATTATCTCTACTGTTCGAAGCAATGAGAACGGATC GGTGGGTTTTGTTTCGAATCCTCAACGAGCAAATGTGGCGCTGACTCGTGCAAGGTATTGCCTCTGGATTTTAGGAAATGAAGCAACTTTAGTTAAGAGT GGCTCTATTTGGAAGGAGATAGTCAACGATGCGAAGCATCGGCAATGCTTCTATAACGCTGAAGAGGATGAGAGTTTGGCTCAGGCTATTACAGAAAGCT TGATCGAGCATGGCCGACTTGATGTTCTGCTACGAACTCACTCCCCATTGTTCCGGAATGCAAGATGGATGGTTTTTTTCAGTGATGATTTTCGGAGATC CGTGGCGAGAGTTAGGAATGTCAGAATCTGTAAGGAAGTGCTTTCCCTATTAGCCAAGCTTTCAAATGGTTGGCGTCAGCATCATTCTCGCAAGAAGAGA AGCCTACTGGTTCACAATGGCATTTCTTCTCCACTGATAGAGCAGTATAAAGTTAGTGGACAGCTAAATATGATCTGGACTGTGGACATTCTGCAGGAAA ACTCATTCTGCATTCAAGTTTTGAAGGTTTGGGATATTTTACCATCATCTGATATACCAAAACTAGCACCGCGTCTCGACACCTTGTTTCGGAATTATAC GGAGGAGCAGATGAATCGCTGCTTATACAAATGTATGGAGGGGAATTTGGTTGTTCCAATGAGATGGACAGTGGACTCGTCTAGTGATCATCAGGACAGC TGCGGCGAAGCCGATGCTGTGCAGCTGCCGAAATCACTTGCATCACTCTGTCTAGACGATGGACAGTGGACTCGTCTAGTGATCGAGTAA
AA sequence Show only first row Show all	>Potri.004G077600.1 pacid=42796329 polypeptide=Potri.004G077600.1.p locus=Potri.004G077600 ID=Potri.004G077600.1.v4.1 annot-version=v4.1 MDKRTDRVKWEKVKGRGFLDLVFSWSIEDVLNKDLYKDQVEEIPNSFMSTAHYMKAFITPLHVETHADLLSSTESLAGAPTYRILRVRKSKDYKPPKDLF YEISMEETRGGYVPWVGDLIALTNVKLKCIDDLRKTQQSYHVAFVHAVKRGNRLTPSILSSKPIVDEEGLKNGTLFAVHLINLMTNLRIWRSLHLELEGR NMNVIEKVLQNNFNDDGDCTICSSRKKSDAASACIRDTLQSSNLNSSQEAAVLSCIHTARCWHQYTVKLVQGPPGTGKTKTASCLLHALLRMKCRTLTCA PTNIAVVEVAARVVSTVADLVEYETYGMGDIILFGNWERMKFDGDQNDLLHVFLDHRADILEKCFDPSTGWKRILASLISLLEDSEAQYHLYLQDNMGKE GLLTCEQFVWKRFDFSGKQLKFCIVNLYTHLPTTLISLQVMRIMTRALDLMTSLETLLLSLSAADEGLKQILGENEDEERKLHNRIKLINEKRECLNTLR LLSLKFQVPEFADKNAIEKFCLSNACLIFCTVSSSARLHSIRMAPLRCLVIDEAAQLKECESTIPLQLFGLHHAILIGDERQLPAIVNSEISGKAGFGRS LFERLVKLGCKSHLLNIQYRMHPSISLFPNTEFYGRQVLDAPNVQETGYRRRFLQGDMFESYSFINIAHGKEEFVEKQSFKNTVEAAAAADIVGRLFKDI NGTGKKVSIGIISPYQAQVHAIQAKIGKFISDSDSALSVSVGTVDGFQGGEEDLIIISTVRSNENGSVGFVSNPQRANVALTRARYCLWILGNEATLVKS GSIWKEIVNDAKHRQCFYNAEEDESLAQAITESLIEHGRLDVLLRTHSPLFRNARWMVFFSDDFRRSVARVRNVRICKEVLSLLAKLSNGWRQHHSRKKR SLLVHNGISSPLIEQYKVSGQLNMIWTVDILQENSFCIQVLKVWDILPSSDIPKLAPRLDTLFRNYTEEQMNRCLYKCMEGNLVVPMRWTVDSSSDHQDS CGEADAVQLPKSLASLCLDDGQWTRLVIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65810			P-loop containing nucleoside t...		Potri.004G077600 [exp]	0	1
AT5G11620			SWIM zinc finger family protei...		Potri.006G238000 [exp]	1.41	0.9709
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.017G139500 [exp]	2.00	0.9663
AT3G50150			Plant protein of unknown funct...		Potri.016G039500 [exp]	2.23	0.9625
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245600 [exp]	3.00	0.9674
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099200 [exp]	3.16	0.9685
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.005G122700 [exp]	5.19	0.9551
AT3G10680			HSP20-like chaperones superfam...		Potri.008G014000 [exp]	7.48	0.9584
AT5G37180		ATSUS5, SUS5	ARABIDOPSIS THALIANA SUCROSE S...		Potri.017G139100 [exp]	7.74	0.9599
AT4G39810			Polynucleotidyl transferase, r...		Potri.007G088500 [exp]	9.16	0.9517
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.015G010100 [exp]	10.00	0.9332

Compare expression of checked genes

Potri.004G077600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.