Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65810 558 / 1e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G65780 524 / 2e-167 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 463 / 3e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 458 / 5e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 457 / 7e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 439 / 8e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 420 / 1e-132 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 394 / 2e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 200 / 8e-53 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 189 / 1e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G077700 [exp] 1794 / 0 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140200 [exp] 1603 / 0 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077100 [exp] 1603 / 0 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.017G140501 [exp] 1576 / 0 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140601 [exp] 1562 / 0 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140300 [exp] 1056 / 0 AT1G65780 572 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077800 [exp] 920 / 0 AT1G65780 719 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077500 [exp] 670 / 0 AT1G65810 827 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077600 [exp] 663 / 0 AT1G65810 843 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 512 / 2e-154 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035774 [exp] 419 / 1e-129 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 418 / 1e-129 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 402 / 2e-122 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 189 / 1e-48 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 164 / 1e-40 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 158 / 1e-38 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 152 / 1e-37 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011054 [exp] 153 / 2e-37 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10003024 [exp] 152 / 8e-37 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.004G077650.1 pacid=42794799 polypeptide=Potri.004G077650.1.p locus=Potri.004G077650 ID=Potri.004G077650.1.v4.1 annot-version=v4.1 ATGGAGAAAACTGAAGAAGAATTAGTAGCTGGTAGAAGCTTGGTAGATTTGGTGTTCTCTTGGTCTATCGGGGATGTACTCAACAAAGATCTTTGCAGAA ACAAGGTGAAGAAGATACCAGAGACGTTCATGTCAACAACACATTACATGAAGTCATTCATTCCCGCACTAATCGAGGAAACTCGTGCAGACTTATGCTC AAACATGATAATGATCTCCCAAGCACCTACAAGAGAAATCTTTTCAGTGGGAATGGATAAAAAGAATAAGCCTCCGGAAGACTTGTTTTATAACATCTGG TTTAAAAAAAGGAGAAACAAAGCCAATGGGAAAGAAATATATGAGCCTGACGTTGGAGATCTCCTTGCTTTGACAGATGTAAGACCGAAAGACATTGATG ACTTGAACAGGCCTGGGTTTAACTATCTTCTTGCATATGTTCATAGGCTATCTGAATGGCAAGATGACGACGATAAATATGTAATTTTGTCAACTCTCAC ATCCAAACCCATTCAATTTGAAATAGAAGACCAGGAAAATAAAAAGGAGTCTATCATTGCTGGAAAAGGAAGGCGAAAGACCATGAAAGCTAATGTCTAC GTTGTTTACCTAGTGAACATGATGACAAATATTCGTATATGGAGATCATTGAACTCAGATCTGGAAGGAGGGAACATGAACATTATCCAGAATGTGCTTC ATACTAGCTCAGCTATGTTGTGTCTGATCCTGCAGGATGGCCAAGATTGCTCTCACTGCTTATCTGAAGTGAATAAAAGTGCTACACTTTCTGGTATGGA AGAAACCATAATCAGCTCTTCCAATTTAAATGACTCGCAGCAAGATGCAATTGTAAGCTGCATTGGTCTGAGTGAATGCCAACATCAAAGTACTGTGAAA CTAATTTGGGGCCCTCCGGGGACTGGCAAAACAAAGATGATTGGTTTATTATTGTTCTCTCTCCTTAAATTGAAGTGCAGGACCCTTACATGTGCTCCAA CCAATATTGCTGTGTTGGAAGTAACATCGAGACTCCTAAGGCTAGTTACAGACTCTCGTGAAGATGACACTTATGGACTTGGAGATATAATTCTATTTGG GAATGGGAAGCGAATGAAGATCTCTGAGAATGATGATCTTGAAGATATATTTCTTGGCCATCGTGTTAAAGTACTTGAATATTGCTTTAGCCCGTCGAAT GGGTGGAAGCACACTGTAGACTCATTGATAAATTTGCTTGAAGATCCTGAGAATCAGTACCGCCGGTACTTGGAAAATATGGAGAAAAAAAATGAGGAGG GAGAGAGAGAGGATCAGGAAGATGAAATGCTTGAAATTGAAGAGATAAACAACAAGAAAGAGAAAGATGAAGTGGTCAATGATCAAAACAAAAAGGGCAG GAACAGAGTTCTTCTTCAGGCCTTGAAAGATGACATGAAAAAGGAAAAACAAAAACAAAAACAAAAGGTTTTTTCTCATCAAGAGAATCTTACAAAGTGT GAGGAAAAGGAATATAAAGATGGAAAGGTAAATAAGGAAGATATTCTCTCTTTCGAGGAATTCGTAAAGGAATGGTTCAAATTCCTTAGTGCGAAGTTGG ATATTTTAATTGCAGGTTTATATACGCACTTGCCAACATCTATCATTTCATTAGAAGTGGTGAAGAGCATGACAAGAGCTGTTGATTCACTCAGCTGCCT CAAACCCTTGTTGTATAGTGTTAGTGTTGGAGATGAAGGTTTAAAACAAGTCCTCAACGATTTTGAAAATGAAGGAAGCAGCGCTGGTCAATTTTCCCGG TTGTCCTTTATGAGAAACTATTGTATTCAGACACTGAATTCACTTCCTCGAGAATTTGAAGTTCCCAATTTTTTTGATAATAGGGCAGCCAGATACTTTT GCTTGGGAAATGCGTGTCTGGTTTTCTGTACTGCTTCAAGCTCTGCCAAGTTGCACACAGAAGGAGTGACACCGATAAAATTGTTGGTTATTGATGAAGC TGCCCAGCTTAAAGAATGTGAATCGACTATTCCATTGCAACTTTCTGGTCTTCGCCATGCCATTCTTATAGGTGACGAGCGCCAACTTCCTGCCATGGTT CAAAGCAAGATTTCCGAGGAAGCTGAATTCGGGAGGAGTTTGTTTGAGAGATTGGTAATACTGGAACACGAGAAACACCTTCTGAATACGCAGTATAGGA TGCACCCATCTATAAGCTTATTCCCAAATAAAGAGTTCTATGATATGCTAATTCAGGATGCTTCAAATGTCAAAGAAAGAAACTATCAGAAACAATTCCT TCAAGGCAATATGTATGGCCCTTACTCATTTATTAATGTAGCCAATGGGAAAGAGCAATCCAACGACGGCCGCAGCAAGAAAAATTTGGTCGAGGTTGCT GTAGTTTCAGCAATAGTTGCAGGCCTTTTTAAAGAATTTAAAAGGGCAAGAAAGAGGATGAGCATAGGAGTCATATCACCATACAATGCTCAAGTGTATG CAATTCAACAAAAAATTGGAAATACTTACAGTACATTTAGTGACTTTGCTGTAAATGTTCGGTCTGTCGATGGATTTCAAGGCAGCGAGGAGGATGTTAT CATTATCTCTACAGTCAGATGCAATGCAAGTGGATCAGTGGGTTTTCTTTCCAATCGCCAAAGGGCAAATGTTGCGCTGACCCGTGCACGGTACTGCCTC TGGATACTGGGAAATGGAGCAACTCTTGTCAACAGTGGCTCTATTTGGAAGAAATTGGTTACTGACGCGAAGGAACGAGGGTGTTTCTACAATGCTGATG AGGATAAAAGCTTGTCCAAGGCAATAATGGATGCCTTGTTAGAGTTGGACCAACTTGATGATTTGTTGAATGTCAATTTTCTACTGTTCAGAAATGCAAG ATGGAAGTTTTGCTTCAGTGAAAACTTTCGGAAATCTATTATGAAAGTGGGAAATGAGGCTCGTCAGGAAGTGATTTCTTTGTTGGCAAAGCTTTCAAGT GGCTGGCGTCAATCTCCTGAAGAGAGAAACATCATTGTCCTACACGGAACTTCTTCTGAACTGTTAGAAAATTACAGAGTCAATGACCAGCTCAGTCTCA TTTGGACAGTGAATATAATCAAGGAAAACAAAAACGACACTCAAATTCTTAAGGTTTGGGATGTTTTATCATTACATGATTTACCGAAACTAGCAAGGAG CCTCGATGCTGTCGTTGGAAATTATACAGTGAATAAGATGAACCGCTGCAGACACAAATGCACAGAAGGGGATTTGGTTGTTCCAATGAGATGGTCAATA AGTTCCGGTGCCTCTCTGGAGAGTAGTAATCCTGAAACCGATCCTGCACAGCTTCTGTCACAACCATTAGCTTCACTTGTTATCAGGGATGAATCAGAAG CACCAGCAACAACTAGTAGACAGCCCTTGAGGTCTAAGAAAGATGGATTTAGCAGTGGAACAAGGGGATCAAAACCTACGTGGTGA
AA sequence Show only first row Show all	>Potri.004G077650.1 pacid=42794799 polypeptide=Potri.004G077650.1.p locus=Potri.004G077650 ID=Potri.004G077650.1.v4.1 annot-version=v4.1 MEKTEEELVAGRSLVDLVFSWSIGDVLNKDLCRNKVKKIPETFMSTTHYMKSFIPALIEETRADLCSNMIMISQAPTREIFSVGMDKKNKPPEDLFYNIW FKKRRNKANGKEIYEPDVGDLLALTDVRPKDIDDLNRPGFNYLLAYVHRLSEWQDDDDKYVILSTLTSKPIQFEIEDQENKKESIIAGKGRRKTMKANVY VVYLVNMMTNIRIWRSLNSDLEGGNMNIIQNVLHTSSAMLCLILQDGQDCSHCLSEVNKSATLSGMEETIISSSNLNDSQQDAIVSCIGLSECQHQSTVK LIWGPPGTGKTKMIGLLLFSLLKLKCRTLTCAPTNIAVLEVTSRLLRLVTDSREDDTYGLGDIILFGNGKRMKISENDDLEDIFLGHRVKVLEYCFSPSN GWKHTVDSLINLLEDPENQYRRYLENMEKKNEEGEREDQEDEMLEIEEINNKKEKDEVVNDQNKKGRNRVLLQALKDDMKKEKQKQKQKVFSHQENLTKC EEKEYKDGKVNKEDILSFEEFVKEWFKFLSAKLDILIAGLYTHLPTSIISLEVVKSMTRAVDSLSCLKPLLYSVSVGDEGLKQVLNDFENEGSSAGQFSR LSFMRNYCIQTLNSLPREFEVPNFFDNRAARYFCLGNACLVFCTASSSAKLHTEGVTPIKLLVIDEAAQLKECESTIPLQLSGLRHAILIGDERQLPAMV QSKISEEAEFGRSLFERLVILEHEKHLLNTQYRMHPSISLFPNKEFYDMLIQDASNVKERNYQKQFLQGNMYGPYSFINVANGKEQSNDGRSKKNLVEVA VVSAIVAGLFKEFKRARKRMSIGVISPYNAQVYAIQQKIGNTYSTFSDFAVNVRSVDGFQGSEEDVIIISTVRCNASGSVGFLSNRQRANVALTRARYCL WILGNGATLVNSGSIWKKLVTDAKERGCFYNADEDKSLSKAIMDALLELDQLDDLLNVNFLLFRNARWKFCFSENFRKSIMKVGNEARQEVISLLAKLSS GWRQSPEERNIIVLHGTSSELLENYRVNDQLSLIWTVNIIKENKNDTQILKVWDVLSLHDLPKLARSLDAVVGNYTVNKMNRCRHKCTEGDLVVPMRWSI SSGASLESSNPETDPAQLLSQPLASLVIRDESEAPATTSRQPLRSKKDGFSSGTRGSKPTW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	0	1
AT1G65810			P-loop containing nucleoside t...		Potri.004G077100 [exp]	1.00	0.9491
AT1G65810			P-loop containing nucleoside t...		Potri.004G077700 [exp]	1.41	0.9382
AT1G65780			P-loop containing nucleoside t...		Potri.017G140200 [exp]	1.73	0.8836
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.001G133400 [exp]	2.00	0.8362
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.004G208300 [exp]	3.16	0.8224
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.017G112100 [exp]	4.58	0.8096
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.014G036900 [exp]	6.32	0.8044
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024200 [exp]	9.16	0.8118
AT1G21740			Protein of unknown function (D...		Potri.005G108400 [exp]	10.58	0.7718
AT2G20560			DNAJ heat shock family protein...		Potri.007G135900 [exp]	13.41	0.7971

Compare expression of checked genes

Potri.004G077650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.