Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65780 719 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 494 / 2e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 484 / 2e-153 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G52090 379 / 4e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 382 / 4e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37140 365 / 3e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37160 360 / 9e-109 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 338 / 4e-103 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 156 / 7e-39 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 153 / 1e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140200 [exp] 954 / 0 AT1G65780 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140501 [exp] 943 / 0 AT1G65780 798 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G140601 [exp] 925 / 0 AT1G65780 777 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G077650 [exp] 917 / 0 AT1G65810 559 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077700 [exp] 906 / 0 AT1G65810 818 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.004G077100 [exp] 806 / 0 AT1G65810 478 / 3e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 702 / 0 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 702 / 0 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G142960 [exp] 687 / 0 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035776 [exp] 441 / 1e-130 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035775 [exp] 352 / 2e-105 AT5G37150 561 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035774 [exp] 344 / 2e-102 AT1G65810 541 / 7e-180 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10037353 [exp] 340 / 2e-100 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10033462 [exp] 163 / 2e-40 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 145 / 3e-35 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 144 / 3e-34 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 142 / 4e-34 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003960 [exp] 138 / 7e-33 AT4G15570 938 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037303 [exp] 138 / 1e-32 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.004G077800.1 pacid=42795347 polypeptide=Potri.004G077800.1.p locus=Potri.004G077800 ID=Potri.004G077800.1.v4.1 annot-version=v4.1 ATGGAGGGGAGTAAAAGCTTGATACAGATGGTCTTTTCTTGGTCTGTTCAAGATGTTCTTAATCAAAACCTCTATAAAGACAAGGTGAGGAAAATCCCAG AGACGTTCCCGTCAGTGACTCATTATAGGAGCTCATTTATTCTCCCACTTCTCGAGGAAACTCGTTCTGATTTGTGTTCAAGCATGATGACAGTGTCATC AGCACCAGTGTGTGAAATATTGTACATTGAGAAGTCAGGGGATTACAAGGAGCCCAATGATTTGATATATGATGTTGGAGTGAATAAAATGAATGATGCA GAGAATGGGAAGGAAGTGTACGTTCCCGAGAATGGAGATCTCCTTGTTTTGGCAGAGGTATGGCCGAAATGCATTGGTGATTTGAGCTGGTTTAATGAAT CATATAAGATTGCTTTAGTTCAAAGGAAAAAAAGATTTGAACATGAAGATTATGACGAGATTCAAATTTTATCATCGAAGCCCATCAAAGAGCAAGACAT GCAGCAACATACCAAGCAAAAGACTCGTTTTTCTGTTTTTCTGACAAACATGAAAACAAATGTTCGAATATGGAAGGCACTGTCCTTGCTAGGAGAAGGG AACATGAACATCATTCAACAAGTTCTGCAAACTGATTCCTCTGTGGTAGACAATTGTGCCAACTGTTTCATTAGAGAAAAGCACAACGTTGATGCATCAA CTTTAGGTGCATATATTCGCTCCTTTGATCTAAATGCTTCCCAAGAAGAAGCAGTTTTATCCTGTATATGTGCGAGGGAATGTCATCATCGGAATTCAGT CAAACTAATATGGGGTCCTCCTGGGACAGGAAAAACAAAGACTATTGGTGCATTATTATTTGCATTTTTTAAAAGGAAATGCAGAACCCTTACCTGTGCC CCAACCAATGTGGCAGTGTTGGAAGTTACGACACGGCTTCTGAATTTGGTAATTCCAAAGCTTGAATATCAGACTTATGGTCTTGGAGATATTATTTTAT TTGGGAATGGTGAGCGGATGAAGATTTGTAACCATGATGACCTTCTTGATGTATTTCTTGACTGTCGTGCTCATATACTTTCCAATTGTTTAGCACCTTC ATCTGGATGGAATTATCATTTAAGATTGATGATATGCTTGCTTGAAGATCCTGGCAAGCTTTACCATGAGTACTTGCAAGAACTAGCCAACAGAAAGAAA GACAAAAATTTCAAAGCACAAGAGAAGGGAATTCTTAGAAATGAGAAGATTCAAAACAACAAAGAAAAACAGGATGATGTCAACTCTAAAAAGTCCAGAA ACCAAAATAACAATGTTTTTTGGAGGAAAGTTATTTTACAAACCTTAGAAGAAAGCAAGAAGACATGGAAGGAGAAATCTTGTTGTAGGAAGGAAAGCCG CTTGAAGCACAACAGAAAAGTGGACATGGTTCATTTTTCTCAAGATCATGAGATTGAAGGATTGACATTCGAGGAGTTTGTAAACTGTAAATTTAATTAC TGCAAAGATCAGATGCGGATGCATGTTGTAATCATGCATACTCACTTGCCATCTTCTGTCATTTCTCCAAGAGTGGTAAAAATGATGATTGAATTTCTCG AGTTTCTTGAACTGCTTGATTCTTTGTTACAAGCTGCTGATGAAGGGTTAAGTCATGCCTTCAGTCAATCTATGGATGAACCTTATGGAATTGGCTTTTC TAAGCAGCACAAGCTGGAAGAGGCTAGAGAACATTGCCTTAAGTTACTCAAATTGCTCCACAGTAAATTTACTCTTCCAGACATTTCTGGGGAGTCTAAA ATCAAACTTTTCTGTCTAGAAAAGGCTCGCTTGATATTTTGCACTGCTTCAAGCTCTGCTAAGTTGTATGCAGAGGATATGTTACGGTCGAGTCTGGAAG TGTTGATTATAGATGAAGCTGCCCAACTGAAAGAGTGTGAATCAACTATCCCTTTACAATTTCCCGGTCTGCGTCATGCTATCCTCGTAGGGGATGAGTG CCAGTTGCCTGCAATGGTTCAAAGCAAGATTTCTGAGAAAGCTGAATTTGGAAGAAGTTTATTCCTAAGACTGGCACAATTGGGACACAAAAAACACCTT CTGAATGTTCAGTATAGAATGCATCCATCAATAAGCTTGTTTCCAAATGTAGAGTTCTATGGAAAGCAGATTCTTGATGCTCCACTTGTTAAAGAAAGAA GCTATGAGAAGTGTTTCCTTCAAGGAAAAATGTATGGCAGTTATTCTTTCATAAATGTAGACTATGGACATGAAGAGGCTGATGATAGGCACAGCCGAAA AAATGTGGTAGAGGTAGCTGTGGTCTCTGAAATAGTTGCAAAACTTTTTGAAGAATCAGTTTCAATGAAAGAGACATTGAGCGTTGGTGTTATATCACCT TACAGTGCTCAAGTGTCTGCCATTCAAGAGAAACTTGGAAAGACATTAAGTAGGGGTTCTGGCAATGGTTTCTCTGTCAGTGTGCGCTCTGTTGATGGGT TTCAAGGTGGCGAGGAAGATATCATAGTAATCTCCACTGTCAGATGTGATTTGATGGGTTTGGTGGGGTTCCTTAAAAGTCCCCAGAGAACAAATGTGGC TTTGACTCGTGCAAGGTATTGCCTTTGGATAGTGGGAAATGGAGTAACTTTAGGTAATAGTGATTCTGTCTGGGAGAGAATGGTCATTGATGCCAAGACT CGGGGATATTTTTACAATGCTGATGAGGATGAGAGCTTGGCTCAAGCTATCATAGCTGCACTCGTTGAGGTTGGCAAAACTGATCAATTTCCTAATGCAC ATTTGGTCCTCTTTAAAAGTGCCACGTGGAAGGTTTCCTTTCATGACGGTTTCTCCAAATTTGTTGCGAGAACTAAAACCATGGAGATTTGTAAGGAAGT TATTTCAATGTTAAGGAAGCTTTTAAGCGGTTGGCGTCAGCCTCACAAAGGGAGAGATCCTAATTTCACCAATGGGGTTTCTTCTCAGCTGTTGGAGCAA TATAAGATTAACGGATCACTCTATCTTGTCTGGACTGTAGACATTCTAGAGGAAAATGCATGCATTTTCCAGGTTCTGAAGGTTTGGGATCTATTACATT TGTCTGAGATACCGAATTTAGCAAAGCTTGTTGACACCTTCTATGGAAAATATACAGGGGATCAAATTAATCGATGCAAGCTAAGGCACTTCGAAGGGAA CTTGCAGGTTCCGATGACCTGGCCTGTTCATTCTAATGAACACCCTAAAGATGATCCTGTGGAGTTTTTGTCTATCCAGTTTGCTTCACTCAGTTTACTG GATTAA
AA sequence Show only first row Show all	>Potri.004G077800.1 pacid=42795347 polypeptide=Potri.004G077800.1.p locus=Potri.004G077800 ID=Potri.004G077800.1.v4.1 annot-version=v4.1 MEGSKSLIQMVFSWSVQDVLNQNLYKDKVRKIPETFPSVTHYRSSFILPLLEETRSDLCSSMMTVSSAPVCEILYIEKSGDYKEPNDLIYDVGVNKMNDA ENGKEVYVPENGDLLVLAEVWPKCIGDLSWFNESYKIALVQRKKRFEHEDYDEIQILSSKPIKEQDMQQHTKQKTRFSVFLTNMKTNVRIWKALSLLGEG NMNIIQQVLQTDSSVVDNCANCFIREKHNVDASTLGAYIRSFDLNASQEEAVLSCICARECHHRNSVKLIWGPPGTGKTKTIGALLFAFFKRKCRTLTCA PTNVAVLEVTTRLLNLVIPKLEYQTYGLGDIILFGNGERMKICNHDDLLDVFLDCRAHILSNCLAPSSGWNYHLRLMICLLEDPGKLYHEYLQELANRKK DKNFKAQEKGILRNEKIQNNKEKQDDVNSKKSRNQNNNVFWRKVILQTLEESKKTWKEKSCCRKESRLKHNRKVDMVHFSQDHEIEGLTFEEFVNCKFNY CKDQMRMHVVIMHTHLPSSVISPRVVKMMIEFLEFLELLDSLLQAADEGLSHAFSQSMDEPYGIGFSKQHKLEEAREHCLKLLKLLHSKFTLPDISGESK IKLFCLEKARLIFCTASSSAKLYAEDMLRSSLEVLIIDEAAQLKECESTIPLQFPGLRHAILVGDECQLPAMVQSKISEKAEFGRSLFLRLAQLGHKKHL LNVQYRMHPSISLFPNVEFYGKQILDAPLVKERSYEKCFLQGKMYGSYSFINVDYGHEEADDRHSRKNVVEVAVVSEIVAKLFEESVSMKETLSVGVISP YSAQVSAIQEKLGKTLSRGSGNGFSVSVRSVDGFQGGEEDIIVISTVRCDLMGLVGFLKSPQRTNVALTRARYCLWIVGNGVTLGNSDSVWERMVIDAKT RGYFYNADEDESLAQAIIAALVEVGKTDQFPNAHLVLFKSATWKVSFHDGFSKFVARTKTMEICKEVISMLRKLLSGWRQPHKGRDPNFTNGVSSQLLEQ YKINGSLYLVWTVDILEENACIFQVLKVWDLLHLSEIPNLAKLVDTFYGKYTGDQINRCKLRHFEGNLQVPMTWPVHSNEHPKDDPVEFLSIQFASLSLL D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65780			P-loop containing nucleoside t...		Potri.004G077800 [exp]	0	1
AT1G05790			lipase class 3 family protein ...		Potri.014G150800 [exp]	1.41	0.8328
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Potri.002G055300 [exp]	5.19	0.7887
AT3G07510			unknown protein		Potri.014G176400 [exp]	5.65	0.7929
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	5.83	0.8513
AT5G44090			Calcium-binding EF-hand family...		Potri.005G227100 [exp]	6.63	0.7617
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.008G108800 [exp]	6.92	0.7659
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	7.74	0.7997
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	7.74	0.7968
AT4G19645			TRAM, LAG1 and CLN8 (TLC) lipi...		Potri.002G056600 [exp]	8.48	0.8126
AT1G63770			Peptidase M1 family protein (....		Potri.001G102051 [exp]	17.97	0.7651

Compare expression of checked genes

Potri.004G077800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.