Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RPL19.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02780 309 / 3e-108 EMB2386 embryo defective 2386, Ribosomal protein L19e family protein (.1) AT3G16780 308 / 1e-107 Ribosomal protein L19e family protein (.1) AT4G02230 307 / 1e-107 Ribosomal protein L19e family protein (.1) AT4G16030 69 / 3e-15 Ribosomal protein L19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140800 [exp] 330 / 1e-116 AT3G16780 315 / 2e-110 Ribosomal protein L19e family protein (.1) Potri.012G037500 [exp] 324 / 4e-114 AT1G02780 317 / 2e-111 embryo defective 2386, Ribosomal protein L19e family protein (.1) Potri.015G029500 [exp] 324 / 4e-114 AT3G16780 309 / 5e-108 Ribosomal protein L19e family protein (.1) Potri.015G037100 [exp] 238 / 2e-80 AT1G02780 201 / 5e-66 embryo defective 2386, Ribosomal protein L19e family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016829 [exp] 312 / 3e-109 AT3G16780 363 / 2e-129 Ribosomal protein L19e family protein (.1) Lus10038417 [exp] 306 / 8e-107 AT3G16780 348 / 9e-124 Ribosomal protein L19e family protein (.1) Lus10038418 [exp] 300 / 2e-103 AT3G16780 337 / 3e-118 Ribosomal protein L19e family protein (.1) Lus10023387 [exp] 308 / 3e-103 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1) Lus10037707 [exp] 295 / 2e-99 AT3G16780 343 / 8e-118 Ribosomal protein L19e family protein (.1) Lus10023388 [exp] 281 / 2e-97 AT3G16780 324 / 2e-114 Ribosomal protein L19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01280 [poplar] [flax] Ribosomal_L19e Ribosomal protein L19e
Representative CDS sequence Show only first row Show all	>Potri.004G078000.1 pacid=42794276 polypeptide=Potri.004G078000.1.p locus=Potri.004G078000 ID=Potri.004G078000.1.v4.1 annot-version=v4.1 ATGGTTTCCCTCAAACTCCAAAAGCGGCTTGCAGCTAGTGTCCTAAAGTGTGGCAAAGGAAAAGTTTGGCTTGACCCGAATGAAGGCAATGAGATCTCCA TGGCTAATTCACGCCAGAACATAAGGAAGCTTGTGAAGGATGGTTTCATTATCAGAAAGCCAACTAAGATTCACTCTCGGTCCCGCGCTCGACGCATGAA GGAAGCTAAGAGAAAGGGACGTCACTCTGGCTATGGTAAGCGCAAGGGAACCAGGGAAGCTAGGCTGCCAACAAAGGTCCTCTGGATGAGGAGGATGCGT GTTTTAAGGCGTCTTCTTCGCAAGTATCGCGAGTCAAAGAAGATTGACAAGCACATGTACCATGACATGTACATGAAGGTGAAGGGTAATGTGTTCAAGA ACAAGAGAGTTCTAATGGAAAGCATCCACAAATCAAAGGCAGAGAAGGCTAGGGAGAAGACTTTGTCCGATCAATTTGAGGCTAAGCGGGCAAAGAACAA GGCTAGCAGGGAGAGGAAATTTGCTAGGAGGGAAGAACGATTAGCCATGGGACCTGGGGCAGAAAAGCCAGTAGCTGCACCACCCGCTGCTGTTTCTCAA CCAGCAGAGGGAACTAAGAAGTCCAAGAAGTGA
AA sequence Show only first row Show all	>Potri.004G078000.1 pacid=42794276 polypeptide=Potri.004G078000.1.p locus=Potri.004G078000 ID=Potri.004G078000.1.v4.1 annot-version=v4.1 MVSLKLQKRLAASVLKCGKGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRMR VLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERLAMGPGAEKPVAAPPAAVSQ PAEGTKKSKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.004G078000 [exp]	0	1	Pt-RPL19.3
AT5G08170		ATAIH, EMB1873	EMBRYO DEFECTIVE 1873, AGMATIN...		Potri.015G055300 [exp]	1.73	0.8723
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.010G162600 [exp]	2.82	0.8277
AT3G21820		SDG36, ATXR2	SET DOMAIN PROTEIN 36, histone...		Potri.017G038700 [exp]	2.82	0.8128	SDG943
AT1G47820			unknown protein		Potri.014G121300 [exp]	3.87	0.8207
AT3G16640		TCTP	translationally controlled tum...		Potri.008G221200 [exp]	4.24	0.8190
AT3G16640		TCTP	translationally controlled tum...		Potri.010G013400 [exp]	4.69	0.8410	Pt-TCTP.2
AT3G05700			Drought-responsive family prot...		Potri.013G011200 [exp]	7.93	0.8329
AT1G45976		SBP1	S-ribonuclease binding protein...		Potri.002G124700 [exp]	9.38	0.8001
AT2G20480			unknown protein		Potri.001G009501 [exp]	10.39	0.7528
AT1G02870			unknown protein		Potri.014G130400 [exp]	11.22	0.8151

Compare expression of checked genes

Potri.004G078000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.