Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37020 1058 / 0 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G30330 727 / 0 ARF ARF6 auxin response factor 6 (.1.2) AT1G19220 509 / 8e-166 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT1G19850 485 / 2e-158 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G20730 488 / 7e-157 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT5G62000 396 / 5e-125 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 376 / 2e-119 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 374 / 2e-117 ARF ARF4 auxin response factor 4 (.1) AT3G61830 361 / 1e-114 ARF ARF18 auxin response factor 18 (.1) AT2G46530 355 / 2e-112 ARF ARF11 auxin response factor 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G141000 [exp] 1429 / 0 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.011G091900 [exp] 733 / 0 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.005G207700 [exp] 729 / 0 AT5G37020 694 / 0.0 auxin response factor 8 (.1.2) Potri.002G055000 [exp] 722 / 0 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2) Potri.001G358500 [exp] 721 / 0 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.006G077800 [exp] 530 / 2e-173 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 526 / 2e-171 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G145800 [exp] 519 / 5e-169 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.005G236700 [exp] 510 / 1e-167 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007386 [exp] 1135 / 0 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10031354 [exp] 1115 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 1113 / 0 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10020804 [exp] 1019 / 0 AT5G37020 913 / 0.0 auxin response factor 8 (.1.2) Lus10033598 [exp] 803 / 0 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 723 / 0 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 703 / 0 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10017640 [exp] 686 / 0 AT5G37020 762 / 0.0 auxin response factor 8 (.1.2) Lus10027600 [exp] 523 / 2e-171 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10024320 [exp] 493 / 5e-164 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain CL0405 [poplar] [flax] PF06507 [poplar] [flax] Auxin_resp Auxin response factor
Representative CDS sequence Show only first row Show all	>Potri.004G078200.3 pacid=42794732 polypeptide=Potri.004G078200.3.p locus=Potri.004G078200 ID=Potri.004G078200.3.v4.1 annot-version=v4.1 ATGAAGCTTTCAACATCAGGGTTGGGCGGTCAGCAAGCTGGTCAAGAAGGGGAGAAGAAATGTTTGAATTCAGAGTTGTGGCATGCTTGTGCTGGGCCAC TGGTGTCCCTACCAACTGCGGGGAGCAGAGTGGTCTACTTCCCTCAGGGTCATAGTGAGCAGGTAGCTGCAACTACTAACAAAGAAGTTGATGCTCACAT CCCAAATTATCCCAGTTTGCCACCCCAGTTGATATGCCAGCTCCACAATGTCACCATGCATGCAGATGTTGAAACGGATGAAGTTTATGCCCAAATGACA TTACAGCCTTTGACACCGCAAGAGCAAAAGGAGACTTTTCTTCCAATGGACTTGGGAATGCCAAGCAAGCAGCCCACAAATTATTTTTGCAAGACATTGA CTGCAAGTGATACTAGTACACATGGAGGCTTCTCTGTTCCTCGTCGTGCTGCTGAGAAAGTCTTTCCTCCACTGGATTTCACCCAGCAGCCTCCAGCTCA GGAACTTATCGCCAGGGATCTCCATGATGTTGAGTGGAAGTTTAGGCACATTTTCCGAGGACAGCCCAAACGGCATCTACTTACAACGGGTTGGAGTGTG TTTGTAAGTGCTAAAAGACTTGTTGCTGGAGATTCTGTTCTTTTTATCTGGAATGAGAAAAACCAACTTCTTTTGGGAATTCGCCGGGCCACTCGACCAC AAACTGTAATGCCATCGTCTGTGTTATCTAGTGACAGCATGCACATTGGTCTCCTAGCTGCTGCAGCTCATGCTGCTGCAACTAATAGCTGTTTTACAGT GTTCTATAACCCAAGGGCTAGTCCATCTGAGTTTGTTATACCTCTATCCAAATACATTAAAGCAGTATTTCACACACGCATTTCAGTTGGAATGCGCTTC CGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGTAGGTACATGGGTACGATAACTGGCATAAGTGATCTGGATCCTGTTCGCTGGCCTAATTCGCACT GGCGATCTGTCAAGGTTGGCTGGGATGAGTCAACAGCAGGTGAGAGGCAGCCAAGGGTGTCATTATGGGAGATTGAGCCTTTAACAACTTTCCCCATGTA TCCATCACTATTTCCCCTCCGACTGAAACGGCCTTGGCATCCTGGGTCACCATCTTTGCTTGACAGCAGAGATGAAGCGAGCAATGGCTTAATGTGGCTA AGGGGTGGAAGTGGAGAACCAGGTCTTCCATCTCTGAATTTTCAAGCTAATATGCTCCCCTGGATGCAGCAGAGGCTAGATCCAACTATGCTGGGAAATG ATCATAATCAGCGGTACCAGGCCATGTTAGCAGCTGGTATGCAAAACCTGGGAAGTGGAGATCCCTTGAGGCAGCAATTCATGCAGCTTCAGCAACCTTT TCAATACCTCCAACAGTCGAGCAGCCATAATCCACTGTTGCAGCTGCAGCAGCAGCAGCAACAGCAAGCAATTCAACAATCCATCCCTCATAATATCCTG CAAGCGCAAAACCAAATTTCAACAGAAAGCTTACCCCGTCACCTCCTACAGCAGCAACTCAACAACCAGCCAGGTGATCAGGCTCAGCAACACCAACATA TCTATCATGATGGACTTCAGATTCAAACTGATCAACTCCAGAGACAACAGTCAAATTTGCCTTCTCCATCATTTTCAAAAACAGAATACATGGACTCAAG CTCAAAGTTCTCAGCAACTAATACCCCAATGCAAAACATGCTGGGTTCTCTGTGTAGTGAAGGGAGTGTCAATCTTTTGGACTTCTCCAGAGCTGGTCAA TCTACACTAACCGAACAGTTACCCCAACAGTCCTGGGTCCCAAAGTATGCACATCAAGAGGTCAATGCTTTTGCTAATTCAATTTCACTCCCACGGACAT ACCCTGAGAAAGATCCCTCAATGGAAGCTGAAAATTGTAGTTCTGATGCCCAGAATCCGACTCTTTTTGGTGCAAATATTGATTCATCTGGACTCTTACT ACCTACAACGGTGCCCAGATATTCTACTTCATCAATTGATGCTGATGTCTCCTCAATGCCATTAGGGGATTCTGGGTTTCAGAATTCTCTGTATGGTTGT GTGCAAGACTCTTCTGAGTTATTGTCAAATGCAGGACAAATGGACCCGCCAACCCCAAGTGGAACATTTGTCAAGGTCTATAAATCAGGGTCGGTTGGGC GCTCATTGGACATCTCCCGGTTCAGCAGCTATCATGAGCTGCGAGGAGAACTGGCTCAGATGTTCGGAATTGAGGGGAAATTGGAAAACCCTCATAGATC AGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTACTTCTCCTTGGAGATGACCCCTGGGAGTTATTTGTGAACAATGTTTGGTATATCAAGATA CTCTCTCCGGAGGATGTATTAAAATTGGGAGAGCAGGGTGTAGAACCCTCTGGCCCAAATGCAGTGCACAGGATGAGTGGTGGTGTGGCTTAA
AA sequence Show only first row Show all	>Potri.004G078200.3 pacid=42794732 polypeptide=Potri.004G078200.3.p locus=Potri.004G078200 ID=Potri.004G078200.3.v4.1 annot-version=v4.1 MKLSTSGLGGQQAGQEGEKKCLNSELWHACAGPLVSLPTAGSRVVYFPQGHSEQVAATTNKEVDAHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMT LQPLTPQEQKETFLPMDLGMPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFTQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV FVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVFHTRISVGMRF RMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSPSLLDSRDEASNGLMWL RGGSGEPGLPSLNFQANMLPWMQQRLDPTMLGNDHNQRYQAMLAAGMQNLGSGDPLRQQFMQLQQPFQYLQQSSSHNPLLQLQQQQQQQAIQQSIPHNIL QAQNQISTESLPRHLLQQQLNNQPGDQAQQHQHIYHDGLQIQTDQLQRQQSNLPSPSFSKTEYMDSSSKFSATNTPMQNMLGSLCSEGSVNLLDFSRAGQ STLTEQLPQQSWVPKYAHQEVNAFANSISLPRTYPEKDPSMEAENCSSDAQNPTLFGANIDSSGLLLPTTVPRYSTSSIDADVSSMPLGDSGFQNSLYGC VQDSSELLSNAGQMDPPTPSGTFVKVYKSGSVGRSLDISRFSSYHELRGELAQMFGIEGKLENPHRSGWQLVFVDRENDVLLLGDDPWELFVNNVWYIKI LSPEDVLKLGEQGVEPSGPNAVHRMSGGVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	0	1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.007G007100 [exp]	2.00	0.7952
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.001G358500 [exp]	6.00	0.7241	Pt-ARF6.3
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	6.48	0.7914
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.006G085900 [exp]	6.92	0.8058	AS1.1
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	7.48	0.7901	ARF6.4
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	10.09	0.8029
AT1G50660			unknown protein		Potri.004G015800 [exp]	10.39	0.7517
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Potri.007G017100 [exp]	10.95	0.7141	Pt-ALDH3.2
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Potri.016G003800 [exp]	11.31	0.7267
AT1G31910			GHMP kinase family protein (.1...		Potri.001G135500 [exp]	12.84	0.7249

Compare expression of checked genes

Potri.004G078200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.