Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65720 87 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142100 [exp] 193 / 6e-63 AT1G65720 88 / 5e-22 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031363 [exp] 100 / 4e-26 AT1G65720 112 / 5e-31 unknown protein Lus10020795 [exp] 92 / 7e-23 AT1G65720 105 / 3e-28 unknown protein Lus10010961 [exp] 59 / 2e-10 AT1G65720 82 / 2e-19 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G078500.1 pacid=42794504 polypeptide=Potri.004G078500.1.p locus=Potri.004G078500 ID=Potri.004G078500.1.v4.1 annot-version=v4.1 ATGGCACCCTCAAAGCTCATCTTCACCCTCTTCATCCTCCTTTCCTCCCTCTCCTTCTCATGCTCAGCAAGACCTTGCAAAACCCTTTTCATCTCTTCTT ATTCCTTGTCCATCAAACCCCTTAACCCTAACCCTAACAACCCATCTTCTGGTTTCTTTATCGTTACTGAAATCGAAGAAACCTCAACTTCCACCTTCCA CTCGAACTTCTTTAACCGCAGATTCATCCCTTTCATCCCTAACAATAATTACGAGAAATCCCAAGAAATTCATGACAAGAAGGGTTTTCAAGAAACCGCC CAGGTGGGGTCGGTTTGGCCTGGATTTGGTGGTTATGATTTGAGTTCGTTGCGTGATCGTACTAAGGATATTCTTAGCGTGGTGGTTGCTTTGCTTTTTG GTGTCGGTTGTGGTGCTCTTACCGCAGCTACGATGTACTTGGTTTGGTCTTTTTTTTCTCCTTCGCAGCCGCGCTATAGTCATTATTTTGATGGAGATTT TAGTGATGATGAGGAGGAGGATGTGAAGAAAATTGGGTATGTCAAGATTCCTGAGGCGGAGCAAGTTAAATGCGGTTCGGTATGA
AA sequence Show only first row Show all	>Potri.004G078500.1 pacid=42794504 polypeptide=Potri.004G078500.1.p locus=Potri.004G078500 ID=Potri.004G078500.1.v4.1 annot-version=v4.1 MAPSKLIFTLFILLSSLSFSCSARPCKTLFISSYSLSIKPLNPNPNNPSSGFFIVTEIEETSTSTFHSNFFNRRFIPFIPNNNYEKSQEIHDKKGFQETA QVGSVWPGFGGYDLSSLRDRTKDILSVVVALLFGVGCGALTAATMYLVWSFFSPSQPRYSHYFDGDFSDDEEEDVKKIGYVKIPEAEQVKCGSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65720			unknown protein		Potri.004G078500 [exp]	0	1
AT1G65720			unknown protein		Potri.017G142100 [exp]	4.12	0.8008
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Potri.005G109900 [exp]	10.00	0.6874
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Potri.003G067100 [exp]	10.00	0.6403
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.015G023300 [exp]	12.60	0.6576	Pt-UBC.4
AT2G22640		ATBRK1, BRK1, H...	BRICK1, putative (.1)		Potri.014G010000 [exp]	14.42	0.6193
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Potri.008G176500 [exp]	24.39	0.6379	TIM17.2
AT1G16210			unknown protein		Potri.009G140200 [exp]	40.69	0.5813
AT3G43520			Transmembrane proteins 14C (.1...		Potri.006G217400 [exp]	40.89	0.5554
AT3G57785			unknown protein		Potri.006G056900 [exp]	41.58	0.5797
AT2G31490			unknown protein		Potri.006G077400 [exp]	42.16	0.6225

Compare expression of checked genes

Potri.004G078500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.