Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02700 343 / 2e-120 NC domain-containing protein-related (.1) AT5G06370 289 / 1e-98 NC domain-containing protein-related (.1) AT5G16360 289 / 2e-98 NC domain-containing protein-related (.1) AT5G16330 258 / 7e-87 NC domain-containing protein-related (.1) AT1G01225 241 / 4e-80 NC domain-containing protein-related (.1) AT4G00905 233 / 1e-76 NC domain-containing protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142300 [exp] 462 / 2e-167 AT3G02700 328 / 2e-114 NC domain-containing protein-related (.1) Potri.006G203300 [exp] 296 / 2e-101 AT5G06370 396 / 4e-141 NC domain-containing protein-related (.1) Potri.002G174700 [exp] 253 / 2e-84 AT1G01225 333 / 7e-116 NC domain-containing protein-related (.1) Potri.014G101300 [exp] 252 / 4e-84 AT1G01225 352 / 2e-123 NC domain-containing protein-related (.1) Potri.013G043100 [exp] 87 / 6e-21 AT5G06370 87 / 1e-20 NC domain-containing protein-related (.1) Potri.005G056300 [exp] 46 / 2e-06 AT5G16330 49 / 1e-07 NC domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010962 [exp] 314 / 6e-109 AT3G02700 268 / 8e-91 NC domain-containing protein-related (.1) Lus10029402 [exp] 299 / 1e-102 AT5G06370 410 / 3e-146 NC domain-containing protein-related (.1) Lus10030231 [exp] 241 / 9e-80 AT1G01225 360 / 1e-126 NC domain-containing protein-related (.1) Lus10005981 [exp] 238 / 9e-79 AT1G01225 360 / 8e-127 NC domain-containing protein-related (.1) Lus10004198 [exp] 124 / 9e-35 AT5G06370 210 / 1e-68 NC domain-containing protein-related (.1) Lus10031362 [exp] 84 / 2e-20 AT3G02700 69 / 6e-18 NC domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF04970 [poplar] [flax] LRAT Lecithin retinol acyltransferase
Representative CDS sequence Show only first row Show all	>Potri.004G078700.1 pacid=42794901 polypeptide=Potri.004G078700.1.p locus=Potri.004G078700 ID=Potri.004G078700.1.v4.1 annot-version=v4.1 ATGGGACTTCTTTCGAACAAGATCGATAGAGAGGTGTTAAAGCCAGGGGATCATATCTACTCATGGAGAAACGCTTACTTATATGCCCATCACGGCATAT ATGTTGGTGATGAAACGGTGATCCATTTCACTCGGGGAGCGGGCCAAGAAATTGGCACAGGAACTGTGTTAGACCGATTTGTTTTCAGCTCATCTCCCTC TCATCCTTCAGATAATCCATGCCCAAAATGTGGTGATCAATCAAGGCTTGATGGTGTCATCTCGTCCTGCATTGACTGTTTCCTCTCAGGTGGCGATCTC TATCTTTTTGAGTATGATGTCTCACCAGCTCTCTTCCTTGCTAAACCTCGAGGTGGTACCTGCACCCTTGCCAAATCTGACCCACCAGAAGACGTCCTTC ACCGTGCTTCCTTCCTCTTGCAGAATGGTTTTGGTGGATACCACATTTTCAAGAACAACTGTGAGGATTTCGCAATCTACTGTAAGACTGGTTTGCTCAT TATTACTAATATTAGTGTTGGCCGAAGTGGGCAGGCTGCTACCTTCTTAGCTGCTACTAGTGCTGTTGTTTCTTCACCACTTCGATTTTTGACAGCCAGC TTTAGCGGCCTGGCAGTTGTGGGATATGGGATGTATTGTGTCGGTCGGCTAGTTTCTGATATCGGAGTACGTCGTGATGTGTGCAAAATCCCTGTTGAGC AGCTTGTTGCCAGTTCTCGCCGAAATGAGTCAGAAGTTGTGGCTGACCTGGCCAAGGAAAATTAA
AA sequence Show only first row Show all	>Potri.004G078700.1 pacid=42794901 polypeptide=Potri.004G078700.1.p locus=Potri.004G078700 ID=Potri.004G078700.1.v4.1 annot-version=v4.1 MGLLSNKIDREVLKPGDHIYSWRNAYLYAHHGIYVGDETVIHFTRGAGQEIGTGTVLDRFVFSSSPSHPSDNPCPKCGDQSRLDGVISSCIDCFLSGGDL YLFEYDVSPALFLAKPRGGTCTLAKSDPPEDVLHRASFLLQNGFGGYHIFKNNCEDFAIYCKTGLLIITNISVGRSGQAATFLAATSAVVSSPLRFLTAS FSGLAVVGYGMYCVGRLVSDIGVRRDVCKIPVEQLVASSRRNESEVVADLAKEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02700			NC domain-containing protein-r...		Potri.004G078700 [exp]	0	1
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.007G130900 [exp]	8.66	0.7156
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G104000 [exp]	9.16	0.6629
AT5G49650		XK2, XK-2	XYLULOSE KINASE 2, xylulose ki...		Potri.019G077600 [exp]	10.19	0.7139
AT1G16570			UDP-Glycosyltransferase superf...		Potri.001G394300 [exp]	14.28	0.7495
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Potri.003G001000 [exp]	16.43	0.7465	Pt-ARF1.11
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Potri.006G051800 [exp]	16.85	0.7573	ACD11.1
AT4G03560		FOU2, ATCCH1, A...	FATTY ACID OXYGENATION UPREGUL...		Potri.013G131100 [exp]	22.73	0.7404	CCH1.1
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.014G164400 [exp]	25.57	0.6503
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Potri.019G070801 [exp]	25.65	0.6911
AT3G07170			Sterile alpha motif (SAM) doma...		Potri.014G190800 [exp]	26.38	0.7185

Compare expression of checked genes

Potri.004G078700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.