Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01580 692 / 0 FRD1, ATFRO2, FRO2 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) AT1G01590 638 / 0 ATFRO1, FRO1 ferric reduction oxidase 1 (.1) AT5G23980 627 / 0 FRO2, ATFRO4, FRO4 ferric reduction oxidase 4 (.1) AT1G23020 621 / 0 ATFRO3, FRO3 ferric reduction oxidase 3 (.1.2) AT5G23990 530 / 1e-180 ATFRO5, FRO5 ferric reduction oxidase 5 (.1) AT5G50160 330 / 1e-102 ATFRO8, FRO8 ferric reduction oxidase 8 (.1) AT5G49730 295 / 2e-89 ATFRO6, FRO6 ferric reduction oxidase 6 (.1) AT5G49740 288 / 7e-87 ATFRO7, FRO7 ferric reduction oxidase 7 (.1) AT1G19230 100 / 2e-21 Riboflavin synthase-like superfamily protein (.1.2) AT4G25090 95 / 6e-20 Riboflavin synthase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142700 [exp] 1176 / 0 AT1G01580 677 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.014G088000 [exp] 781 / 0 AT1G01580 762 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Potri.017G142800 [exp] 680 / 0 AT5G23980 894 / 0.0 ferric reduction oxidase 4 (.1) Potri.004G079200 [exp] 679 / 0 AT5G23980 870 / 0.0 ferric reduction oxidase 4 (.1) Potri.012G084800 [exp] 310 / 3e-95 AT5G50160 657 / 0.0 ferric reduction oxidase 8 (.1) Potri.015G083200 [exp] 300 / 2e-91 AT5G50160 650 / 0.0 ferric reduction oxidase 8 (.1) Potri.001G079000 [exp] 284 / 3e-85 AT5G49730 886 / 0.0 ferric reduction oxidase 6 (.1) Potri.006G137300 [exp] 97 / 1e-20 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.015G109800 [exp] 95 / 8e-20 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039268 [exp] 762 / 0 AT1G01580 722 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036379 [exp] 596 / 0 AT1G01580 691 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10036381 [exp] 590 / 0 AT1G01580 701 / 0.0 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10014957 [exp] 519 / 3e-176 AT5G23980 665 / 0.0 ferric reduction oxidase 4 (.1) Lus10027507 [exp] 461 / 2e-147 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1) Lus10007586 [exp] 293 / 2e-88 AT5G49740 867 / 0.0 ferric reduction oxidase 7 (.1) Lus10019488 [exp] 281 / 5e-84 AT5G50160 691 / 0.0 ferric reduction oxidase 8 (.1) Lus10012161 [exp] 256 / 2e-76 AT5G49740 723 / 0.0 ferric reduction oxidase 7 (.1) Lus10043339 [exp] 112 / 1e-25 AT3G48190 321 / 5e-96 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10033423 [exp] 97 / 2e-20 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [poplar] [flax] 2heme_cytochrom PF01794 [poplar] [flax] Ferric_reduct Ferric reductase like transmembrane component CL0076 [poplar] [flax] FAD_Lum_binding PF08022 [poplar] [flax] FAD_binding_8 FAD-binding domain CL0091 [poplar] [flax] NAD_Ferredoxin PF08030 [poplar] [flax] NAD_binding_6 Ferric reductase NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G079100.1 pacid=42795253 polypeptide=Potri.004G079100.1.p locus=Potri.004G079100 ID=Potri.004G079100.1.v4.1 annot-version=v4.1 ATGGGTTCTGGACCTTCTGGTGCAGCAATGAAGCTGGTTGCAGCGGTGATGACCTTTTTGTCAATGGTGGTTTTTCTGGGATACATGATGATTTGGTCTA TGAAGTCTACTAATACCTTTTACTTGCATTGGTGGCCTGATGTTCTGAAAAAAACAAGTTCCACTTATCTTGGAGAACAAGGCACAACCACACTGATTTA TGCATTTCCTATCCTCTTCATTGCTACCATTGGCTCCTTGTACCTTCATCTGGAGAAGAAGTATGATCATGATCATAGCACCAGGTTCATTTCTCGGATT ATCTTGTTGAAACGGCCGGTGATAACGAAAGGTCCACTGGGGATTGTTTCTTGGACAGAGCTAACATTTCTGGCCATGTTTGTTGCATTGCTGGTTTGGT CCATGTATTCTTATACGCATAATATGTTTGCATTTGCTGCCCTGGAAGCTGCTCAAGAAAAATTTCAAGCGTGGGAAGTTAAGTTGCGAAGTGCAGCTCT AGGTCTAGGGCTTGCAGGGAACACCTGCCTGGCCTTTCTCTTCTTTCCAGTGACTAGAGGGTCTTCAATTTTGCAGTTTGTTGGCCTGACCTCAGAGGCA AGCATCAAGTACCATATATGGCTAGGGAATATTACTATGGTCATCTTCACAGCTCATGGTCTAAGCTACATCACTTATTGGTCCCATACACATCAAATTT CACAGATGCTCAAATGGGACAAGTTCGTGGTTGCCAATGTGGCTGGAGAAATAGCTTTGCTTGCTGGATTGGTGATGTGGGCGACCAGTTTGGGACGCAT AAGGCGAAAGCTTTTCGAGCTCTTCTACTATAGTCATCATCTCTACATTGTCTTTGTTATCTTCTATGTTTTCCATGTTGGTTTTGCTGAATCTTGCCTC ATTCTTCCTGGTTTCTACCTCTTCTTGATCGATCGATATTTGAGATCCTTACAATCTCAGCAAAAAGTTCGCTCTGTCGCAGCACGCATTTTACCTTGCG AAACAGTAGAGTTGAACTTCTCCAAGAGTTCAGGGTTGAGCTATGCACCAACAAGCATTGCGTTTATAAATGTGCCTAGCATTTCCAGGATACAATGGCA TCCCTTTACTGTTACCTCCAACAGCAATATGGATTCTGATAAGCTAAGTATTGTCATCAAACGCGAAGGAAGTTGGTCTCATAAGTTGTATCAGATTTTG TCCTCCCCTTCTCCTACTAACCGACTTGAGGTCGCCATCGAAGGACCCTATGGACCTCCTTCAACCAATTTTACGAGGTATGAGAGGCTAGTACTGGTGA GTGGTGGAAGCGGCATAACTCCTTTCATCTCCATCATCCGCGAGATCATCTTTAAATCCAGCACAACAAGCAGCAAGACTCCAAGGATTCACCTCATATG TGCTTTCAAGAAATATGTCGATCTCACCATGCTTGACCTTCTTCTCCCAGTTTCTGGCACCACTCTTGACCTATCTCGGTTACATCTACAAATTGAAGCC TACATAACCCGAGAGACAGAGTCAAAAACAGAGAGCCAGAATTCTATCAGAACAATATTGTTCAGGCCTAATCCATCAGATAGACCAGTTTCTGCAGTGT TAGGACCTGACAGCTGGCTGTGGCTCGGGGCGATAATCTCATCTTCTTTCATCATTTTCCTTATCTTGATTGGCCTTCTCACACGATTCTACATATACCC AATCGACCACAATACCAACATGAAGTATCCTGTCCCAGCAAGTTCAGCTTTCAACATGTTATTTGTGTGTATAGCCATAACAATAGCTGCCTCTGCAGCT TTTCTGTGGAACAAAAGAGAGAATGCTAAGGAAACAAGCCAGATTCGAACCACGGATATGTCAACACCGGCACTATCACCCACTTCATTGGTGTACGAAA CAGAACTGGAAAGCCTTCCTCACCAATCTCTTCGCCAAGCCACCACAGTGCATCTAGGTCAAAGGCCAAATCTGAAAAAAATATTATCAGAGTACAAGGA AGAAAAGGTAGGAGTTTATGTTAGCGGGCCAAGGACGATGAGGCAAGAAGTGGCAGCAATTTGTTCATCTTTTTCAGCAGATAATCTTCATTTTGAGTCT ATCAGCTTCAGCTGGTGA
AA sequence Show only first row Show all	>Potri.004G079100.1 pacid=42795253 polypeptide=Potri.004G079100.1.p locus=Potri.004G079100 ID=Potri.004G079100.1.v4.1 annot-version=v4.1 MGSGPSGAAMKLVAAVMTFLSMVVFLGYMMIWSMKSTNTFYLHWWPDVLKKTSSTYLGEQGTTTLIYAFPILFIATIGSLYLHLEKKYDHDHSTRFISRI ILLKRPVITKGPLGIVSWTELTFLAMFVALLVWSMYSYTHNMFAFAALEAAQEKFQAWEVKLRSAALGLGLAGNTCLAFLFFPVTRGSSILQFVGLTSEA SIKYHIWLGNITMVIFTAHGLSYITYWSHTHQISQMLKWDKFVVANVAGEIALLAGLVMWATSLGRIRRKLFELFYYSHHLYIVFVIFYVFHVGFAESCL ILPGFYLFLIDRYLRSLQSQQKVRSVAARILPCETVELNFSKSSGLSYAPTSIAFINVPSISRIQWHPFTVTSNSNMDSDKLSIVIKREGSWSHKLYQIL SSPSPTNRLEVAIEGPYGPPSTNFTRYERLVLVSGGSGITPFISIIREIIFKSSTTSSKTPRIHLICAFKKYVDLTMLDLLLPVSGTTLDLSRLHLQIEA YITRETESKTESQNSIRTILFRPNPSDRPVSAVLGPDSWLWLGAIISSSFIIFLILIGLLTRFYIYPIDHNTNMKYPVPASSAFNMLFVCIAITIAASAA FLWNKRENAKETSQIRTTDMSTPALSPTSLVYETELESLPHQSLRQATTVHLGQRPNLKKILSEYKEEKVGVYVSGPRTMRQEVAAICSSFSADNLHFES ISFSW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Potri.004G079100 [exp]	0	1
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.007G036400 [exp]	1.41	0.8588	Pt-OBP1.1
AT2G34060			Peroxidase superfamily protein...		Potri.004G052100 [exp]	1.41	0.8436
AT3G61920			unknown protein		Potri.002G178900 [exp]	4.89	0.8008
AT5G43420			RING/U-box superfamily protein...		Potri.002G039700 [exp]	12.00	0.7922
AT5G59350			unknown protein		Potri.010G206100 [exp]	12.36	0.8104
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.016G098200 [exp]	13.03	0.7715	Pt-TIP2.8
AT3G23805		RALFL24	ralf-like 24 (.1)		Potri.001G320700 [exp]	14.42	0.7756
AT4G28600		NPGR2	no pollen germination related ...		Potri.010G068700 [exp]	17.32	0.7639	Pt-NPGR2.1
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Potri.004G075200 [exp]	28.28	0.7806	Pt-GAD.2
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Potri.018G145584 [exp]	37.22	0.7523

Compare expression of checked genes

Potri.004G079100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.