Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52540 439 / 7e-152 Protein of unknown function (DUF819) (.1) AT5G24000 371 / 2e-125 Protein of unknown function (DUF819) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G142841 [exp] 416 / 2e-142 AT5G24000 457 / 5e-159 Protein of unknown function (DUF819) (.1) Potri.017G142882 [exp] 103 / 1e-23 AT5G24000 77 / 2e-16 Protein of unknown function (DUF819) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039273 [exp] 456 / 4e-158 AT5G52540 538 / 0.0 Protein of unknown function (DUF819) (.1) Lus10027508 [exp] 453 / 3e-157 AT5G52540 531 / 0.0 Protein of unknown function (DUF819) (.1) Lus10039272 [exp] 409 / 4e-140 AT5G24000 498 / 3e-175 Protein of unknown function (DUF819) (.1) Lus10027507 [exp] 393 / 2e-125 AT1G01580 475 / 1e-152 FERRIC CHELATE REDUCTASE DEFECTIVE 1, ferric reduction oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF05684 [poplar] [flax] DUF819 Protein of unknown function (DUF819)
Representative CDS sequence Show only first row Show all	>Potri.004G079300.1 pacid=42794189 polypeptide=Potri.004G079300.1.p locus=Potri.004G079300 ID=Potri.004G079300.1.v4.1 annot-version=v4.1 ATGGCATCAATACTTCCATTTCTCCACTCTCCGGTTGTCCCATCCCGCCGGTCATGTTTCATTTCCCGCCAAAATACTCTTATTACCACTGCTAACCCCA CCAGAAGAACGTTACTACCAGCAAATAACGGGAACCAGACATCATTTCTTTCACCTCAAAAGAACCCGAATTTGATTCGATCTTCTGTAACTGTTAGATC CAATCTGATTCTGAATTTCCCTCTTATTTCCCCTACTGATCCATGGGGTATGTGGACTGCTCTCTTCGCCACTGGCGCTTTCGGTATCTGGTCAGAGAGG ACCAAGATTGGAAGTGCATTGAGTGGTGCATTAGTGAGTACTTTAGTTGGACTAGCAGCTAGTAATTTGGGGATTATTTCATGTGAATCTCCTGCTTATT CTATTGTACTGAAGTTTCTGCTACCATTGGCTGTTCCATTGTTGCTGTTTAGAGCTGATTTGCGACGTGTAATTCAGTCTACTGGGACTCTTCTCTTGGC TTTCTTGTTAGGATCAGTTGCGACAACAGTTGGAACAGTATTAGCCTATATGATGGTGCCAATGCGAGCACTAGGTCAGGATAGTTGGAAAATAGCAGCT GCTCTCATGGGTAGACATATTGGTGGAGGTATAATTCTTCTTGGTTGGCATGTTTCTTGCATTTCGGACGCTCTCAGGGTATCTCCATCAGTTTTAGCTG CTGGGCTAGCTGCAGATAATGTTATTTGTGCAGTGTATTTCACATCATTGTTTGCTTTGGCATCTAAGATTCCTGCTGAGTCTTCAGCATCAATCGATGG TTCTGGAATGGACAGCGGGTCTGAGTCAGGCAACAAGCTTCCTGTTCTGCAGACTGCCACTGCCCTTGCTGTGTCGTTTGCTATCTGCAAGGCTGGAGAA TATATCACGAAGTTCTTTGCAATTCCAGGAGGCATCCTGCCAGCCGTTACAGCCATTGTTGTTATCCTAGCAACCGCATTTCCAACCCAGTTCAATCACC TTGCACCATCTGGTGAGGCTTTGGCCCTGATTCTGATGCAGGTATTTTTTGCTGTGGTTGGTGCAAGTGGAAACGTATGGAATGTGATCAATACTGCGCC CAGCATTTTCCTGTTTGCTTTGGTCCAGATTGCCATTCATCTTGCTGTGATCCTTGGACTTGGAAAGCTATTTCGCTTCGACCAAAAGCTGTTGCTAATT GCATCAAATGCTAATGTTGGAGGCCCCACAACTGCATGTGGAATGGCCACTGCTAAAGGGTGGAGTTCGTTGGTTGTTCCCGGCATTCTTGCTGGCATTT TCGGAATTGCCATAGCGACTTTTCTTGGCATTGCTTTTGGAGCAAATGTTCTTCAATACATGTGCAAGTTTTAA
AA sequence Show only first row Show all	>Potri.004G079300.1 pacid=42794189 polypeptide=Potri.004G079300.1.p locus=Potri.004G079300 ID=Potri.004G079300.1.v4.1 annot-version=v4.1 MASILPFLHSPVVPSRRSCFISRQNTLITTANPTRRTLLPANNGNQTSFLSPQKNPNLIRSSVTVRSNLILNFPLISPTDPWGMWTALFATGAFGIWSER TKIGSALSGALVSTLVGLAASNLGIISCESPAYSIVLKFLLPLAVPLLLFRADLRRVIQSTGTLLLAFLLGSVATTVGTVLAYMMVPMRALGQDSWKIAA ALMGRHIGGGIILLGWHVSCISDALRVSPSVLAAGLAADNVICAVYFTSLFALASKIPAESSASIDGSGMDSGSESGNKLPVLQTATALAVSFAICKAGE YITKFFAIPGGILPAVTAIVVILATAFPTQFNHLAPSGEALALILMQVFFAVVGASGNVWNVINTAPSIFLFALVQIAIHLAVILGLGKLFRFDQKLLLI ASNANVGGPTTACGMATAKGWSSLVVPGILAGIFGIAIATFLGIAFGANVLQYMCKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52540			Protein of unknown function (D...		Potri.004G079300 [exp]	0	1
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116000 [exp]	1.41	0.8969
AT3G06840			unknown protein		Potri.008G219500 [exp]	2.44	0.8859
AT1G05190		EMB2394	embryo defective 2394, Ribosom...		Potri.002G229325 [exp]	3.74	0.8951
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Potri.001G291800 [exp]	8.06	0.8755
AT2G44050		COS1	coronatine insensitive1 suppre...		Potri.007G146000 [exp]	10.58	0.8655
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Potri.013G022100 [exp]	15.49	0.8844
					Potri.011G046112 [exp]	15.49	0.8456
AT2G26900		BASS2	bile acid:sodium symporter fam...		Potri.018G074400 [exp]	16.12	0.8627
AT3G01750			Ankyrin repeat family protein ...		Potri.008G179100 [exp]	16.30	0.8477
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.006G203500 [exp]	19.44	0.8435

Compare expression of checked genes

Potri.004G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.