Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24010 1031 / 0 Protein kinase superfamily protein (.1) AT3G46290 729 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 713 / 0 Protein kinase superfamily protein (.1) AT4G39110 668 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 665 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 645 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G61350 630 / 0 Protein kinase superfamily protein (.1) AT2G23200 572 / 0 Protein kinase superfamily protein (.1) AT1G30570 562 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G51550 552 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143049 [exp] 1414 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.001G234200 [exp] 758 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G026600 [exp] 749 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.005G143200 [exp] 656 / 0 AT2G23200 674 / 0.0 Protein kinase superfamily protein (.1) Potri.001G405500 [exp] 652 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.004G158700 [exp] 647 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G128000 [exp] 647 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.010G213200 [exp] 643 / 0 AT3G46290 808 / 0.0 hercules receptor kinase 1 (.1) Potri.005G143700 [exp] 582 / 0 AT5G24010 566 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039274 [exp] 982 / 0 AT5G24010 997 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 980 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10028140 [exp] 712 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 710 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10037887 [exp] 653 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10017478 [exp] 633 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 624 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 506 / 5e-167 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 500 / 1e-164 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 479 / 2e-163 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.004G079700.1 pacid=42793811 polypeptide=Potri.004G079700.1.p locus=Potri.004G079700 ID=Potri.004G079700.1.v4.1 annot-version=v4.1 ATGGAAACCAAAACACTTCTTTTGCTCTCCCTGACACTGCTCTCTCTCGTCTCTTTCTCCACCTCTTTCACTCCTACGGACAACTACCTTATCAACTGTG GTTCAAACACTAACACCTCTTTCATTCCTACAGATAGCAGAATTTTTGGAGCTGAATCCACTTCACAAGGTTCAATCTTTCCCTCGAAAGGCCAGTCCAT TTCACCCAAGAACCAAAACCCATCTCCAAATTCACCAACTTTGTACAACACAGCTAGAGTTTTCACTACTGCTTCAAGCTACAAGTTCAGTATTAAGAGA AACGGGACCCACTTTATACGTTTGCATTTCTCTCCGTTTAAAGCGCAAGGCTTTGATTTATCTACTGCAAAGTTTAGTGTTTTAGTTAATGGGAATTTGT TGTTGAGTGATTTTAGTACCAAAGTTGTTGTGCTTAAAGAGTACGTATTTAGAGTTGATGATAATGCTCTTGAAATTTTGTTTAGTCCTGTTGGTAAATC AAGTTTTGGATTTGTGAATGCAATTGAAGTGTTTTCAGCTCCTAAGGATTTTATTCTTGATGAGGGAGCTAAATTGGTTAGTGCTAATGGAATTGAAGTG TACAAGAATCTTTCTTCACATGTTTTAGAGACAATTCATAGGATTAATGTTGGAGGTTCAAAATTGGTGCCTTTTAATGATACTGTGTGGAGAACTTGGA TTCCTGATGAGGATTTTCTTGTTTTGAAATATGCTGCGAAACGTGCAGTTACTACTCGAGCTCCCAATTATCAGAGTGGGGGAGCTAGTAGGGAGATTGC ACCTGAAAATGTATATATGACTGCACAGCAGTTGAATAAGGATAATAACCCAATTCAGTCAAGATTTAACATCACATGGGATTTTCCAGTGGGATCTGTT GGGGTTCGGCACTTGGTTCGATTACATTTCTGTGATATTGTCAGTACTTCACTTAATCAGTTGTACTTTGATGTGTACCTAAACGAGTACTCCGCGGAAA GTGATTTTGATTTGTCATCCCTTACATTCCATGTACTTTCATCTCCAATGTATGTAGACTATATTGTGGATTCTAATGATTTAGGGGCTGTGCGTGTTAG TGTTGGACCTTCGGCCATTAGTGGTCCTTTGAAAGTCAATGCTATTTTGAATGGGGTGGAGATCATGAAGATGATAAATCCTTCTGGTTCGCAAAGTGGT TCCAAGAAGAGAACTGTTTGGATTGCGGTGGGTTCGAGTATAGGAGGCTTTGTTGTTCTGTGTTTGACTGTCTTTGTAGTAACACTTTCTTGTAAATGCA AGAAGAAGAAACCGAAACCAAGACGAGTAGAAAGTGCAGGTTGGACACCTGTATGTGTTTATGGAGGTAGTACTCATGGTAGAATGTCAGAAGTGACTGT GAATGAATATCGCAGCTTGAAGATCCCTTTTGCTGACGTACAGTTGGCGACCAACAATTTTGATAACCGTCTGAAAATTGGTTCGGGTGGATTTGGTATT GTTTTCAAAGGTGTTCTTAAAGACAACACAAAGGTTGCTGTAAAGAGGGGTCTGCCAGGATCCAGGCAAGGGCTCCCTGAATTCCAATCTGAAATAACAG TTTTGTCGAAGATACGCCACCACCATCTTGTTTCCCTCATTGGGTATTGTGAAGAACAGTCAGAAATGATCCTTGTCTATGAGTACATGGAAAAAGGTCC ATTGAAGGAACACTTGTATGGCCCGGGATGTTCTCATCTGTCCTGGAAGCAAAGGCTTGAGATTTGCATTGGTGCAGCAAGAGGAATTCACTACCTGCAT ACAGGTTCTGCTCAAGGCATTATCCATCGTGACATCAAGTCTACAAATATTTTGCTAGATGAAAATTACGTATCCAAGGTTGCTGATTTCGGTCTTTCAC GATCAGGCCCATGTCTGGATGAGACTCATGTAAGTACTGGTGTAAAAGGAAGTTTTGGATATCTTGATCCAGAGTACTTCCGAAGACAGCAGCTTACTGA CAAATCAGATGTTTATTCATTTGGAGTGGTGCTTTTGGAAGTTCTTTGTGCGAGGCCTGCAGTTGATCCCTTACTTGCTACGGAGCAGGTGAATTTAGCA GAATGGGCAATGCAATGGCAGAAGAAGGGCATGCTCGAGCAAATTATCGATCCTCATCTCGCGGGACAGATAAAGCAAAATTCTTTGAAGAAATTTGGAG AGACAGCAGAGAAATGTTTGGCAGACTATGGTGTCGATAGGCCAAGCATGGGCGATGTATTATGGAATTTGGAGCACGCATTTCAGCTTCAAAAATCTGA TTCTGGACCATCAAGAGAACCACGCGAAGACAGCAATGTGAATGCACCGGAGCTCCCAACACCTAGAATAGCTCCCCAAGATCCATCAAAGAACACTGAG ACTGAAACAGACAGTGGTGATGGTACCTCAGAGATTAAAAACAGCCAAGTTTTTTCACAGTTGATGACCAATGAAGGCAGATAG
AA sequence Show only first row Show all	>Potri.004G079700.1 pacid=42793811 polypeptide=Potri.004G079700.1.p locus=Potri.004G079700 ID=Potri.004G079700.1.v4.1 annot-version=v4.1 METKTLLLLSLTLLSLVSFSTSFTPTDNYLINCGSNTNTSFIPTDSRIFGAESTSQGSIFPSKGQSISPKNQNPSPNSPTLYNTARVFTTASSYKFSIKR NGTHFIRLHFSPFKAQGFDLSTAKFSVLVNGNLLLSDFSTKVVVLKEYVFRVDDNALEILFSPVGKSSFGFVNAIEVFSAPKDFILDEGAKLVSANGIEV YKNLSSHVLETIHRINVGGSKLVPFNDTVWRTWIPDEDFLVLKYAAKRAVTTRAPNYQSGGASREIAPENVYMTAQQLNKDNNPIQSRFNITWDFPVGSV GVRHLVRLHFCDIVSTSLNQLYFDVYLNEYSAESDFDLSSLTFHVLSSPMYVDYIVDSNDLGAVRVSVGPSAISGPLKVNAILNGVEIMKMINPSGSQSG SKKRTVWIAVGSSIGGFVVLCLTVFVVTLSCKCKKKKPKPRRVESAGWTPVCVYGGSTHGRMSEVTVNEYRSLKIPFADVQLATNNFDNRLKIGSGGFGI VFKGVLKDNTKVAVKRGLPGSRQGLPEFQSEITVLSKIRHHHLVSLIGYCEEQSEMILVYEYMEKGPLKEHLYGPGCSHLSWKQRLEICIGAARGIHYLH TGSAQGIIHRDIKSTNILLDENYVSKVADFGLSRSGPCLDETHVSTGVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEVLCARPAVDPLLATEQVNLA EWAMQWQKKGMLEQIIDPHLAGQIKQNSLKKFGETAEKCLADYGVDRPSMGDVLWNLEHAFQLQKSDSGPSREPREDSNVNAPELPTPRIAPQDPSKNTE TETDSGDGTSEIKNSQVFSQLMTNEGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24010			Protein kinase superfamily pro...		Potri.004G079700 [exp]	0	1
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.005G100900 [exp]	1.41	0.8554
AT3G11760			unknown protein		Potri.008G015700 [exp]	1.73	0.8708
AT2G33770		ATUBC24, UBC24,...	UBIQUITIN-CONJUGATING ENZYME 2...		Potri.004G043500 [exp]	3.46	0.8511
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G015700 [exp]	4.89	0.8341
					Potri.017G152701 [exp]	5.65	0.8500
AT2G46800		ATMTP1, ZAT1, Z...	ZINC TRANSPORTER OF ARABIDOPSI...		Potri.002G180100 [exp]	6.32	0.8496	PtrMTP2,Pt-MTP1.2
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Potri.001G276600 [exp]	8.48	0.8403
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412454 [exp]	10.95	0.7924
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Potri.011G168900 [exp]	11.83	0.8359
AT2G30080		ATZIP6, ZIP6	ZIP metal ion transporter fami...		Potri.009G074100 [exp]	11.83	0.8020	ZIP6.2

Compare expression of checked genes

Potri.004G079700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.