Plant FIBer expression Database

Potri.004G080000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G52552 83 / 2e-23 CPuORF14 conserved peptide upstream open reading frame 14 (.1)
AT4G25672 79 / 5e-22 CPuORF12 conserved peptide upstream open reading frame 12 (.1)
AT4G25692 67 / 3e-17 CPuORF13 conserved peptide upstream open reading frame 13 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G143300
[exp]
102 / 5e-31 AT5G52552 82 / 3e-23 conserved peptide upstream open reading frame 14 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027512
[exp]
91 / 2e-26 AT4G25672 76 / 1e-20 conserved peptide upstream open reading frame 12 (.1)
Lus10038842
[exp]
70 / 8e-17 AT4G25670 149 / 3e-45 unknown protein
PFAM info
Representative CDS sequence
>Potri.004G080000.1 pacid=42795779 polypeptide=Potri.004G080000.1.p locus=Potri.004G080000 ID=Potri.004G080000.1.v4.1 annot-version=v4.1
ATGGGCAAATGCAAGGGTTGTGGAAAATTAGGAAGAATGGTGCCAAGGGATGAGTCTGTGGATGCTTATCATTTCTCTCTCTTATTGTCTCCTGTTGTTT
CTGTTTGGGATTGTATTGTCCGGAAGATGAGGTACTCCTTCAGACCTGAGTGGGTGTAG
AA sequence
>Potri.004G080000.1 pacid=42795779 polypeptide=Potri.004G080000.1.p locus=Potri.004G080000 ID=Potri.004G080000.1.v4.1 annot-version=v4.1
MGKCKGCGKLGRMVPRDESVDAYHFSLLLSPVVSVWDCIVRKMRYSFRPEWV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G52552 CPuORF14 conserved peptide upstream ope... Potri.004G080000
[exp]
0 1
AT1G76810 eukaryotic translation initiat... Potri.019G103600
[exp]
11.95 0.8399
AT2G22795 unknown protein Potri.007G008600
[exp]
15.74 0.8326
AT5G45100 BRG1 BOI-related gene 1, SBP (S-rib... Potri.015G118000
[exp]
32.83 0.7795
AT5G36740 Acyl-CoA N-acyltransferase wit... Potri.002G051400
[exp]
33.91 0.8045
AT3G16520 UGT88A1 UDP-glucosyl transferase 88A1 ... Potri.004G069700
[exp]
36.33 0.7788
AT3G06350 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST ... Potri.008G196100
[exp]
36.46 0.7404
Potri.008G224328
[exp]
36.53 0.7881
AT4G36520 Chaperone DnaJ-domain superfam... Potri.005G120700
[exp]
37.34 0.7973
AT3G56930 DHHC-type zinc finger family p... Potri.016G025100
[exp]
39.00 0.7643
AT3G54500 unknown protein Potri.003G200300
[exp]
40.64 0.8011

Potri.004G080000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.