Plant FIBer expression Database

Pt-MIND.1 (Potri.004G080100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-MIND.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24020 441 / 2e-156 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038843
[exp]
447 / 5e-159 AT5G24020 501 / 3e-180 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Lus10014962
[exp]
261 / 8e-87 AT5G24020 288 / 2e-98 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain
Representative CDS sequence
>Potri.004G080100.1 pacid=42795824 polypeptide=Potri.004G080100.1.p locus=Potri.004G080100 ID=Potri.004G080100.1.v4.1 annot-version=v4.1
ATGCTGACACTAAAACCCTTACCCGCAAACACAAAACCCTCGTTCCTCCATTCCTTAACCCCATTCAGACCCAAAACCCAAACCCTAACAAAACCCTTCA
AACCTCACTCAAACCCCGCAATCCAATCAGTCCTACAATGGAACAGAAAGCCCGAACTAGCTGGTGAAACCCCAAGAGTTGTCGTGATAACATCAGGCAA
AGGTGGTGTCGGAAAAACCACAACAACTGCAAATGTTGGCCTCTCCTTAGCTCGCCTTGGCTTCTCTGTTGTCTCAGTTGATGCTGACGTAGGTTTGCGC
AATCTAGACCTTTTGTTAGGGTTAGAAAACCGTGTAAATTATACTCTTGTTGAGGTTATGAATGGGGATTGTCGGTTAGACCAAGCGCTTGTCCGCGATA
AGCGTTGGTCTAACTTTGAACTGTTGTGCATTTCTAAACCCAGGTCGAAATTGCCACTTGGGTTTGGTGGGAAAGCACTTGTTTGGCTTGTCGAGTCTTT
GAAATCGCGGCAAGAAGGGTGCCCGCATTTCATTTTGATTGATTGCCCAGCTGGGATTGATGCAGGGTTCATTACGGCGATAACTCCAGCTAACGAGGCT
GTTCTGGTAACAACTCCTGATATTACTAGCTTGCGTGATGCGGATAGGGTTGTAGGTTTGTTAGAATGTGATGGAATTAGGGATATAAAGATGATTGTTA
ATAGGGTTAGGACGGATATGATTAAAGGGGAAGATATGATGTCGGTGTTGGATGTGCAAGAAATGCTGGGCTTGGCATTGTTGGGGGTGATTCCGGAGGA
TACAGAGGTGATTAGGAGTACTAATAGAGGGTATCCACTTGTTTTGAATAAGCCACCTACACTGGCTGGATTGGCTTTCGAGCAAGCTGCTTGGAGACTT
GTTGAGCAGGATAGTATGAAGGCTGTTATGGTGGAGGAAGAGCCAAAGAAACGTGGGTTTTTCTCGTTCTTTGGTGTATAG
AA sequence
>Potri.004G080100.1 pacid=42795824 polypeptide=Potri.004G080100.1.p locus=Potri.004G080100 ID=Potri.004G080100.1.v4.1 annot-version=v4.1
MLTLKPLPANTKPSFLHSLTPFRPKTQTLTKPFKPHSNPAIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVSVDADVGLR
NLDLLLGLENRVNYTLVEVMNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALVWLVESLKSRQEGCPHFILIDCPAGIDAGFITAITPANEA
VLVTTPDITSLRDADRVVGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLALLGVIPEDTEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRL
VEQDSMKAVMVEEEPKKRGFFSFFGV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G24020 ARC11, ATMIND1,... ACCUMULATION AND REPLICATION O... Potri.004G080100
[exp]
0 1 Pt-MIND.1
AT5G17870 PSRP6 plastid-specific 50S ribosomal... Potri.002G112500
[exp]
6.92 0.9304
AT4G28210 EMB1923 embryo defective 1923 (.1) Potri.013G146900
[exp]
9.59 0.9267
AT1G48460 unknown protein Potri.014G038800
[exp]
10.39 0.9208
AT3G06730 TRXz, TRXP ,TRX... thioredoxin putative plastidic... Potri.001G028500
[exp]
13.52 0.9239
AT3G53700 MEE40 maternal effect embryo arrest ... Potri.004G013300
[exp]
15.65 0.9234
AT3G20330 PYRB PYRIMIDINE B (.1) Potri.001G357200
[exp]
16.79 0.8981
AT3G52170 DNA binding (.1.2) Potri.010G231900
[exp]
18.76 0.9234
AT5G63100 S-adenosyl-L-methionine-depend... Potri.015G082432
[exp]
20.14 0.9147
AT2G44640 unknown protein Potri.014G044200
[exp]
22.58 0.9053
Potri.001G230200
[exp]
22.80 0.9181

Potri.004G080100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.