Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03220 409 / 6e-146 ATHEXPALPHA1.22, ATEXP13, ATEXPA13 EXPANSIN 13, expansin A13 (.1) AT3G55500 273 / 3e-92 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 271 / 2e-91 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT5G56320 269 / 1e-90 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G39700 268 / 4e-90 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G05290 268 / 5e-90 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT3G29030 261 / 1e-87 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT5G02260 261 / 1e-87 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G03090 257 / 5e-86 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT2G40610 256 / 8e-86 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G140000 [exp] 451 / 4e-162 AT3G03220 403 / 4e-143 EXPANSIN 13, expansin A13 (.1) Potri.001G240900 [exp] 270 / 8e-91 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.008G057100 [exp] 269 / 1e-90 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.009G031800 [exp] 269 / 1e-90 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.010G202500 [exp] 268 / 3e-90 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.009G169500 [exp] 267 / 5e-90 AT4G38210 335 / 5e-117 EXPANSIN 20, expansin A20 (.1) Potri.008G088300 [exp] 266 / 2e-89 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.013G060800 [exp] 265 / 4e-89 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1) Potri.004G208300 [exp] 268 / 5e-89 AT4G38210 357 / 2e-124 EXPANSIN 20, expansin A20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010454 [exp] 407 / 4e-145 AT3G03220 408 / 2e-145 EXPANSIN 13, expansin A13 (.1) Lus10003822 [exp] 410 / 2e-143 AT3G03220 409 / 4e-143 EXPANSIN 13, expansin A13 (.1) Lus10027304 [exp] 402 / 7e-143 AT3G03220 411 / 1e-146 EXPANSIN 13, expansin A13 (.1) Lus10039009 [exp] 401 / 2e-142 AT3G03220 412 / 7e-147 EXPANSIN 13, expansin A13 (.1) Lus10037164 [exp] 271 / 3e-91 AT1G69530 420 / 2e-150 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10036763 [exp] 270 / 4e-91 AT1G69530 426 / 3e-153 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Lus10040286 [exp] 269 / 2e-90 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10040801 [exp] 268 / 5e-90 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 267 / 7e-90 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10024388 [exp] 265 / 4e-89 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF01357 [poplar] [flax] Expansin_C Expansin C-terminal domain CL0199 [poplar] [flax] DPBB PF03330 [poplar] [flax] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Potri.004G080200.1 pacid=42795002 polypeptide=Potri.004G080200.1.p locus=Potri.004G080200 ID=Potri.004G080200.1.v4.1 annot-version=v4.1 ATGCCACCACCATTACCCCAAAACCCCATTCACACTCTCCTAAAACCCCTCCTCCTCCTCCTCCTCCTCCTCTTCATCTTCCCCACCGCCACCACCTCCC TCACTTCTTCCACCACTACACCACCACCTCTCTCCACCACCCTATCCCAATGGCAATCCGCACGCGCTACTTACTACGCAGCATCCGATCCCCGGGACAC AGTAGGAGGTGCGTGTGGATATGGGGACTTAGTTAAAGCAGGATATGGAATGGCAACCGTGGGATTGAGTGAATCAATGTTTGAACGTGGACAGATCTGT GGCGCGTGTTTTGAACTTAAGTGTGTTGATGATCTGAGGTGGTGTATTCCTGGGACTTCTATTATTGTTTCTGTCACTAATTTTTGTGCTCCAAATTATG GGTTCACTTCTGATGGTGGTGGAAAATGTAATCCTCCTAATAAGCATTTTGTGCTGCCTATTGAAGCTTTTGAAAAGATTGCCATTTGGAAGGCTGCTAA TATGCCTGTTCAGTATAGAAGGATTAAATGCAGAAAGGAAGGAGGGATTCGGTTTAATATCTCTGGGTCCGGTATTTTCCTTTCGGTGCTGATCAGCAAT GTTGCAGGTGCTGGAGATGTCACTGCAGTGAAGATTAAAGGTTCAAGAACAGGCTGGCTTGATATGGGCAGGAATTGGGGCCAAAACTGGCATGTTAATG CTAATTTACAGAATCAAGCTCTCTCATTTGAGGTCACTAGTAGTGATAGGATGACTGTTATATCTTACAATGTTGCTCCCAAAGATTGGAGATTTGGACA GGCCTTTGAAGGCAAGCAATTTGAGACTTAA
AA sequence Show only first row Show all	>Potri.004G080200.1 pacid=42795002 polypeptide=Potri.004G080200.1.p locus=Potri.004G080200 ID=Potri.004G080200.1.v4.1 annot-version=v4.1 MPPPLPQNPIHTLLKPLLLLLLLLFIFPTATTSLTSSTTTPPPLSTTLSQWQSARATYYAASDPRDTVGGACGYGDLVKAGYGMATVGLSESMFERGQIC GACFELKCVDDLRWCIPGTSIIVSVTNFCAPNYGFTSDGGGKCNPPNKHFVLPIEAFEKIAIWKAANMPVQYRRIKCRKEGGIRFNISGSGIFLSVLISN VAGAGDVTAVKIKGSRTGWLDMGRNWGQNWHVNANLQNQALSFEVTSSDRMTVISYNVAPKDWRFGQAFEGKQFET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.004G080200 [exp]	0	1
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Potri.008G140500 [exp]	2.44	0.8495
AT1G20870			HSP20-like chaperones superfam...		Potri.002G005400 [exp]	5.09	0.8567
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Potri.002G099100 [exp]	5.47	0.8408
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	7.93	0.8604
AT4G27190			NB-ARC domain-containing disea...		Potri.001G443700 [exp]	12.64	0.8086
AT5G50840			unknown protein		Potri.010G219700 [exp]	15.09	0.8393
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.001G298900 [exp]	16.30	0.8357
AT3G23730		XTH16	xyloglucan endotransglucosylas...		Potri.002G236200 [exp]	20.19	0.8311	Pt-XTR7.2
AT2G28580			Plant protein of unknown funct...		Potri.007G132300 [exp]	23.83	0.8470
AT1G04635		EMB1687	EMBRYO DEFECTIVE 1687, ribonuc...		Potri.015G001000 [exp]	30.29	0.8019

Compare expression of checked genes

Potri.004G080200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.