Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49490 38 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G206701 [exp] 139 / 8e-45 AT3G49490 49 / 4e-08 unknown protein Potri.002G230100 [exp] 137 / 6e-44 AT3G49490 45 / 6e-07 unknown protein Potri.001G452300 [exp] 142 / 4e-41 AT1G33050 63 / 6e-10 unknown protein Potri.015G003700 [exp] 45 / 1e-06 AT3G49490 107 / 2e-23 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032925 [exp] 43 / 6e-06 AT3G49490 92 / 3e-18 unknown protein Lus10015581 [exp] 40 / 7e-05 AT3G49490 91 / 5e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G080501.1 pacid=42794410 polypeptide=Potri.004G080501.1.p locus=Potri.004G080501 ID=Potri.004G080501.1.v4.1 annot-version=v4.1 ATGAGTTCTACTAGTTTTAGGGAGAGATTCCTGGATTCTTTAAATGCAAGGAATGGAGGATTCAATAAAAATGAACACATTACTCAGGTCAATGAGAAGG CTCTGGAAGGACATTATGAACTTGAGGAAGAAGAGAACCCTCAAGTTTTGTTCTACAAGAATTTGTGGCTCGAGGCTGAAGCAGCTCTTCGTTCCATGAA GTATAAAGCTTCTGTTCTGGGTATGAAAACTGAGATGGAAAAGATAAAGATGGCAATAAGATAA
AA sequence Show only first row Show all	>Potri.004G080501.1 pacid=42794410 polypeptide=Potri.004G080501.1.p locus=Potri.004G080501 ID=Potri.004G080501.1.v4.1 annot-version=v4.1 MSSTSFRERFLDSLNARNGGFNKNEHITQVNEKALEGHYELEEEENPQVLFYKNLWLEAEAALRSMKYKASVLGMKTEMEKIKMAIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.004G080501 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170000 [exp]	3.00	0.8415
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.008G140700 [exp]	9.89	0.7999
					Potri.017G035401 [exp]	12.96	0.8005
AT3G06880			Transducin/WD40 repeat-like su...		Potri.002G021600 [exp]	15.19	0.7792
					Potri.001G444100 [exp]	15.62	0.8074
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126151 [exp]	18.65	0.7750
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	19.18	0.8104
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.014G179100 [exp]	19.23	0.7929	KAO2.2,KAO2
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.010G181400 [exp]	19.77	0.7843
AT3G16890		PPR40	pentatricopeptide (PPR) domain...		Potri.010G141201 [exp]	22.18	0.7612

Compare expression of checked genes

Potri.004G080501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.