Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03210 439 / 3e-154 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139800 [exp] 631 / 0 AT3G03210 432 / 1e-151 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020802 [exp] 487 / 2e-173 AT3G03210 436 / 1e-153 unknown protein Lus10007384 [exp] 486 / 3e-173 AT3G03210 432 / 4e-152 unknown protein Lus10031359 [exp] 469 / 2e-166 AT3G03210 410 / 2e-143 unknown protein Lus10010965 [exp] 456 / 2e-161 AT3G03210 404 / 4e-141 unknown protein Lus10002776 [exp] 57 / 2e-09 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Representative CDS sequence Show only first row Show all	>Potri.004G080600.1 pacid=42794456 polypeptide=Potri.004G080600.1.p locus=Potri.004G080600 ID=Potri.004G080600.1.v4.1 annot-version=v4.1 ATGCCAATTATGTTCGGTGGCATACAGATAGGAGTCTTGGCAGCTTGTGTGGTGTTATTTGTACCAATGGGAATGGCAGGTTACCATTTAAGCAGAAACA AGATGCTTTTTTTTAGCGGGGCCCTTTTTATTACACTAGCGGTAGGTGTTCATTTGACTCCTTATTTCCCTTCTGTTTCTGATTTTGTTACTTCAGTTCA ATCTGTTGTTGTTTTTGATAATCGTGAGGACTCTTGTATTAATTTGGTTAATGAAGTTATTTGGAATGTGAAACCTCGTGTTATCAGTAGTAATGGTAGT GATAGAAGTAATGATTCTGTTGGTCATGACAAGATATGGGATTGGTCTAAAAATGGGATGGTGAAAGGTTGTGATTTTGAGAAGTTGGGGAGGGGAGATG TTAAAGATTTGCTTAATGGGTCTTGGGTTGTTGTGGCTGGGGATTCACAAGCTCGGTTGCTTGTGCAGTCTTTGTTAAGTTTGATTTTGGATGAGAAAAG GATGGGAATGATCATGGGGGATTTGTTTAAGAGGCATAGTGATTATGAGATTGTTGTGGATGATATTGGTATGAAATTGGATTTTGTTTGGGCTCCATAT GTGGTTAATTTGACGAATTTGATGGTGGGGTTTAAGCAAAATAGAACTTACCCTGATGTCTTGGTGATCGGAGCAGGGTTGTGGCATATGCTTCATGTGA ACAATGCATCGGATTATGATATTGCGTTGGAGAATTTGAGGAGTTCGGTGGTTTCCTTGTTACCCTTTTCGCCAGAATTAGGTACTGATGGGCCTGTGAC AGGTTCTGTATCTGTCAGGTCTCCACATTTGTTCTGGCTTGGGATGCCGATGTTGATAAATGAGATGTTGAATACAGAAGAGAAGAGGGAGAAGATGAAT GATAAAATATGGCATGCTTATTATGGAGCACTGCATGATAGCAGGATCTTGCGCAGTTACGGTGGTCCTCTTCTGTTGTTGGATATTCAATCATTGAGTT GGAATTGTGGACCGAGGTGTACGAATGATGGGATGCATTATGATGGAACTGTTTATGAAGCTGCTGTTCATATTCTACTAAATGCATTGCTGATTGAATC TCATCAGAAGCTTGGATCCACATAG
AA sequence Show only first row Show all	>Potri.004G080600.1 pacid=42794456 polypeptide=Potri.004G080600.1.p locus=Potri.004G080600 ID=Potri.004G080600.1.v4.1 annot-version=v4.1 MPIMFGGIQIGVLAACVVLFVPMGMAGYHLSRNKMLFFSGALFITLAVGVHLTPYFPSVSDFVTSVQSVVVFDNREDSCINLVNEVIWNVKPRVISSNGS DRSNDSVGHDKIWDWSKNGMVKGCDFEKLGRGDVKDLLNGSWVVVAGDSQARLLVQSLLSLILDEKRMGMIMGDLFKRHSDYEIVVDDIGMKLDFVWAPY VVNLTNLMVGFKQNRTYPDVLVIGAGLWHMLHVNNASDYDIALENLRSSVVSLLPFSPELGTDGPVTGSVSVRSPHLFWLGMPMLINEMLNTEEKREKMN DKIWHAYYGALHDSRILRSYGGPLLLLDIQSLSWNCGPRCTNDGMHYDGTVYEAAVHILLNALLIESHQKLGST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03210			unknown protein		Potri.004G080600 [exp]	0	1
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.009G036450 [exp]	1.00	0.9115
AT3G19620			Glycosyl hydrolase family prot...		Potri.001G294700 [exp]	2.44	0.8539
AT1G26660			Prefoldin chaperone subunit fa...		Potri.010G163600 [exp]	3.46	0.8693
AT2G01260			Protein of unknown function (D...		Potri.008G124000 [exp]	4.35	0.8232
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.010G077900 [exp]	5.19	0.8584
AT1G75030		ATLP-3	thaumatin-like protein 3 (.1)		Potri.014G040700 [exp]	5.47	0.8454
AT5G24450			Transcription factor IIIC, sub...		Potri.017G007200 [exp]	5.65	0.8564
					Potri.003G098301 [exp]	6.70	0.8542
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G090150 [exp]	8.24	0.7959
					Potri.001G152550 [exp]	8.48	0.8086

Compare expression of checked genes

Potri.004G080600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.