Plant FIBer expression Database

Potri.004G080800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G17270 909 / 0 Protein prenylyltransferase superfamily protein (.1)
AT5G37130 844 / 0 Protein prenylyltransferase superfamily protein (.1)
AT3G11540 48 / 3e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
AT4G37460 43 / 0.001 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G052200
[exp]
49 / 2e-05 AT4G37460 1333 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.016G075700
[exp]
45 / 0.0002 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.006G208900
[exp]
45 / 0.0004 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Potri.019G025600
[exp]
44 / 0.0007 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Potri.013G051400
[exp]
43 / 0.001 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030019
[exp]
949 / 0 AT5G17270 998 / 0.0 Protein prenylyltransferase superfamily protein (.1)
Lus10035305
[exp]
946 / 0 AT5G17270 997 / 0.0 Protein prenylyltransferase superfamily protein (.1)
Lus10021336
[exp]
52 / 4e-06 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10017009
[exp]
50 / 7e-06 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Lus10001406
[exp]
46 / 0.0002 AT4G37460 1271 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13414 TPR_11 TPR repeat
Representative CDS sequence
>Potri.004G080800.1 pacid=42794744 polypeptide=Potri.004G080800.1.p locus=Potri.004G080800 ID=Potri.004G080800.1.v4.1 annot-version=v4.1
ATGGCTCAAATCCTCCGCGGTTACGAACTCCGTCTCCTCCGCTGCACCCTAACACCGCCGCCTCCGCCGTCTGATTCCCCTTCTCCATGTCCACCGTCCG
ATCCTAACAACCTTCACTCCCACATCAATTTCCTCCTCACTTGTATCCAATCAGGAAATTACCTCCAAGCTCTCTTCTCTGACTCTGCCAAACTCGTCAC
TGCGTCAACACAACTTGACTCAACTAAGTCACCCGACCGAGTTTACAATGAGTTGGTGGAGCGAGTTGAGCAGTTTATAAGGGATGGTGGCGGCGGCGGC
GATGAAGAAGATGGTTTCAGAGTTATTCTGGTCATTTGTGTTGCTATTGCTGCGTTCTTTTGCTTCATTCAGGGTAACATTACTGGGCCAGTGAGTGAGA
TACCTGAATGCCCTTTGCTATTGAAAGTTGAAGAATCTATAGAATGGGATAGTTGGGCTCGAAATCAGCTTATATCAGATGGCGCCCATTTGCTTGGGAA
GTTCTCCAATCTTGAGTGTATAGTTTTTGCTAAAATGTTGGTCATGAAGGCAAAAGATTTGTTATTTGAAGGAAGCATCTCTTCGGCATATGGAATCAGA
AGCATTTCATGGTGGCTTGCTAGGGTCTTGCTTGTTGAACAAAGGATTTTGGATGAGCTATCTTCTTCATTATTTGATTTATTGCAAGTGTCTATGGGTG
AAACCCTACGCCATTTTGGCACCTTGGAACATGTAGCAAATTACTGGGGTGATGAGTTGGGTAATGAAGAAGCAGCTGATATTGTCTCAACAGTCCACTT
GGAAGCAGGAATAATGGAACAGACCTATGGACATGTCGATTCGTGCAGACTGCATCTTGAATCAGCTGAAGTAGCATCAGGGATTCAGCTTTCCCTTACG
GGGGTTCTTGGCTATCGAACCGTGCATCAGGTAGAACCGAAGCAACAAAGGCTACTTGTTGTGGATAGAAGCTCATCACACACTGGCAGTACCAGCTCCA
CAATGAGCCCTGACATCAAGACACGTGATTCTACTACTGCTAAGAATGATCAGCATGAAATATCTCAAGCCTCTGACATTCATAGGACACCAGTATTATT
GGAGACTGGTGACAAGTCTGAAATTGGAGCACAAGGTAATCAAAATGTTGCTCCTCGTGGTGCTGCCCCTTTAAAAGCAGTTCAACAGGCAGTGATTCTG
GCACGGTGCCTTTTGATTGAAATAAGCAGTCGACATGATGAGCTTCAAAGATGGGATATGGCTCCATTCATAGAGACCATCGATTCTCAGCCCACATCAT
TCTTTACTTTACGGTGTTTTTGTGACCTCCTACGTATCCGATGGGAAAAAACTCGTTCTCGCACAAAGCAGCGTGCTTTAGAGATGATGGAGAAATTGGT
TGAGGGCATGCACAACTCTTTGCCTGGAGTGGCACAAAGGATTCCATTTTGTTATATCGCCAATATACCTACTATTCCTGCCCTGCGAAAAGAACATGGT
GAACTTCTAATTAGTTGTGGCTTGATGGGAGAGGCAATTACAATCTTTGAGAGTTTAGAGTTATGGGACAACTTAATATACTGCTACTGCTTATTGGAGA
AAAAGGCAGCAGCTGTTCAACTCATCAAGAAACGGCTGTCTGAAATGCCTAACGACCCGAGGTTATGGTGTTCGTTGGGCGATGTTACAAATGATGATAG
CTGTTATGAAAAAGCCATTGAAGTTTCAAATAATAAGTCTGCACGAGCCAAGCGATCTCTTGCTCGTAGCGCTTACAATAGAGGAGACTATGAAACATCT
AAAATCATGTGGGAGGCTGCACTGGCCCTGAATTCTTTATATCCAGATGGTTGGTTTGCTCTTGGTTCTGCTGCATTGAAGGCTAGGGATGTTGATAAGG
CACTGGTTGGGTTTACTAAAGCTGTTCAATTTGATCCTGAGAATGGGGAGGCTTGGAATAATATTGCTTGTTTACATATGATAAGGAAGAGGAGCGAAGA
GGCCTTCATTGCATTCAATGAAGCCCTGAAGTTCAAACGAGACAGCTGGCAGATGTGGGCACAATATAGTCATGTTGCCTTGGACGTTGGCAATGTTCAT
AAGGCTCTGGAATCTGTTCGGATGGTTTTGAATATAACCAGTGGCAAAGCTACTGGTAAAGAAATTGATGCCGATATATTAGAGAGAATTATGTTAGAAA
TAGAAGAGCGGATTTCAAGGAGACCTTTTAAGCCCCCCAGTGTGTCGGATGATACTAGTCTTACCACTCAACATTGCCCTGATGATTCTCATAATGATTC
CATAAACAAATCAGAACAAAGAATTGCAGTTGGAAGGTCACGCGAAACTGAGCAGCTGGTGGACTTGCTTGGAAAAATCCTACAGCAGATAGTTAAAAGA
GTAAGTAGAGCAGATATTTGGGGCTTATATGCAAGGTGGCACAAACTTAAAGGAGATCTCACAATGTGCTCTGAAGCCCTATTGAAGCAAGTTAGATCAT
ATCAGGGATCTGATTTGTGGAAAGATAGAGATCGATTTAAACTTTACGCACGGGCATCATTGGAACTGTGCAAGGTGTACATGGAAATTTCGTCCTCTAC
TGGTAGTCATCGTGAACTCTCTACAGCTGAGATGCACCTGAAAAACATAGTTAGACAGGCCGGGAGCTTTTCTGACACAGAAGAATTCAAGGATGTTCAA
GCTTGTCTTGATGAAGTGAAGAAACGTCAATCTGATTAA
AA sequence
>Potri.004G080800.1 pacid=42794744 polypeptide=Potri.004G080800.1.p locus=Potri.004G080800 ID=Potri.004G080800.1.v4.1 annot-version=v4.1
MAQILRGYELRLLRCTLTPPPPPSDSPSPCPPSDPNNLHSHINFLLTCIQSGNYLQALFSDSAKLVTASTQLDSTKSPDRVYNELVERVEQFIRDGGGGG
DEEDGFRVILVICVAIAAFFCFIQGNITGPVSEIPECPLLLKVEESIEWDSWARNQLISDGAHLLGKFSNLECIVFAKMLVMKAKDLLFEGSISSAYGIR
SISWWLARVLLVEQRILDELSSSLFDLLQVSMGETLRHFGTLEHVANYWGDELGNEEAADIVSTVHLEAGIMEQTYGHVDSCRLHLESAEVASGIQLSLT
GVLGYRTVHQVEPKQQRLLVVDRSSSHTGSTSSTMSPDIKTRDSTTAKNDQHEISQASDIHRTPVLLETGDKSEIGAQGNQNVAPRGAAPLKAVQQAVIL
ARCLLIEISSRHDELQRWDMAPFIETIDSQPTSFFTLRCFCDLLRIRWEKTRSRTKQRALEMMEKLVEGMHNSLPGVAQRIPFCYIANIPTIPALRKEHG
ELLISCGLMGEAITIFESLELWDNLIYCYCLLEKKAAAVQLIKKRLSEMPNDPRLWCSLGDVTNDDSCYEKAIEVSNNKSARAKRSLARSAYNRGDYETS
KIMWEAALALNSLYPDGWFALGSAALKARDVDKALVGFTKAVQFDPENGEAWNNIACLHMIRKRSEEAFIAFNEALKFKRDSWQMWAQYSHVALDVGNVH
KALESVRMVLNITSGKATGKEIDADILERIMLEIEERISRRPFKPPSVSDDTSLTTQHCPDDSHNDSINKSEQRIAVGRSRETEQLVDLLGKILQQIVKR
VSRADIWGLYARWHKLKGDLTMCSEALLKQVRSYQGSDLWKDRDRFKLYARASLELCKVYMEISSSTGSHRELSTAEMHLKNIVRQAGSFSDTEEFKDVQ
ACLDEVKKRQSD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G17270 Protein prenylyltransferase su... Potri.004G080800
[exp]
0 1
AT5G13680 AtELP1, ELO2, A... ELONGATA 2, ABA-OVERLY SENSITI... Potri.010G208400
[exp]
1.41 0.8681
AT1G68990 MGP3 male gametophyte defective 3 (... Potri.008G112800
[exp]
3.16 0.8456
AT5G51300 splicing factor-related (.1.2.... Potri.003G107200
[exp]
3.46 0.8492
AT3G52140 tetratricopeptide repeat (TPR)... Potri.009G065300
[exp]
4.00 0.8485
AT1G10490 Domain of unknown function (DU... Potri.005G085600
[exp]
5.91 0.8305
AT3G57660 NRPA1 nuclear RNA polymerase A1 (.1) Potri.006G055300
[exp]
7.34 0.8571
AT5G26860 LON1, LON_ARA_A... lon protease 1 (.1) Potri.005G017600
[exp]
7.74 0.8244 Pt-LON_ARA_ARA.2
AT1G61850 phospholipases;galactolipases ... Potri.011G000200
[exp]
11.31 0.8268
AT1G15440 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN ... Potri.003G060500
[exp]
12.00 0.8423
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.002G203700
[exp]
14.69 0.7999

Potri.004G080800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.