Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06590 1102 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034176 [exp] 1197 / 0 AT1G06590 1043 / 0.0 unknown protein Lus10043409 [exp] 1181 / 0 AT1G06590 1016 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12862 [poplar] [flax] ANAPC5 Anaphase-promoting complex subunit 5
Representative CDS sequence Show only first row Show all	>Potri.004G081200.1 pacid=42794738 polypeptide=Potri.004G081200.1.p locus=Potri.004G081200 ID=Potri.004G081200.1.v4.1 annot-version=v4.1 ATGGCATCGCCACCGCAGCCACCTCCGATGACAAACGCGTTTGCATTGACACCACACAAAGTCTCAGTTTGTTTACTTCTTCAAACCTACGCATTACCTG CTCAAACAACACCACCGTTCCCTTTCTCCTCCGTCTCTCAACACAACCGTCTTGGGCTCTACTTATTAGCCCTCACAAAATCTTATGATGATATATTGGA GCCAAAGCTAGAGGAGTTGTTGAATCAATTGAAGGAAATCAGTGGGTCATTGGGGCATTGGTTGATAGATCATTTGACAAGCAGGTTATCATCTTTATCA GCGCCGGATGATTTATTTAGCTTCTTTACTGAAATGAGAGGGATACTTGGAGGATTGGATTCAGTTGTTATGGAAGATAATCAAGTTATTTTGGACCCAA ATAGCAATCTGGGATTGTTTCTCCGTCGTTGCATTCTCACATTTAATCTCTTATCGTTTGAGGGTTTGTGCCATCTTTTGACAAATATTGGGAGTTATTG TAAAGAAGCCATGTCAAGCTGCATGCCATATGAGACACGGCTTTTAGACGAGTCCAGTAATGATTTGGAGACATTATCAGAATATGAGAACATGGACTTG GAGAATTTCATGTTCGGAAAAGTTAATGAAGAAATTGAAGCAAGGAAACAGGCCAGTGAAAGAGTTCCTTTTCACCTTCACGGGCCTAAAGCACTTTCTG GATTGGTTGAAGATATAGAGGTTGTTGCAGATCCAAGTTCCAAACATGGTGACAAATGTGGAGAAACTAGTGCATATGTACATCCTCCAGGAAATGAATT GAGAGATGTTGATCCCTATGGGGAGATATTCCTAAGAACAAACTGGCAGGTACAAGGTTACTTAATGGAGCAAGCAGATGCAATTGAAAAGCATGACAGT TCTTTCTCTTTAAACTCTTTTGAGCTTGTTTTAAGGCAGATTAAAAAATTGGCACCTGAGCTACATCGTGTTCACTTCTTACGATATTTGAACAGCCTGT ATCATGATGATTATTTTGCCGCTTTGGATAATCTTCATCGCTACTTTGATTATAGTGCAGGGGCCGAGGGATTTGATTCAGCTCCATCTTCTTCTGGGTC CAATAGCTCTGGAAGATATGAGATTGGCCTGATATATTTGGGGATGATGCATTTACACTTTGGGCATCCTAAGCAAGCTTTGCAAGTTTTAACTGAAGCA GTTCGTTTTTCTCAACAGCAAAGTAATGAGAGTTGTCTTGCGTACACTTTAGCAGCTATATGCAATGTATTGTCTGAATTTGGTTGCTCAAGCTCAGCAG GAGTACTTGGAACTTCTTTCTCACCTATAACCAGCATGGACACTTCATTGTCTGTTGGGCAACAATTGTTTGTTCTCTTGAGGGAGTCTCTGAAGAGAGC AGAAAGTTTAAAGTTGAAACGATTGGTTGCTTCCAATCATCTTGCTCTGGCCAAATTTGATTTACTGCATGTGCAAAGACCTCTGCTGTCATTTGGTCCC AAAGCTTCCATGAAGCTGAGAACATTTCCAATCAATGTTTGCAAGGAATTAAGATTATGTTCTCATTTGATTAGCGAATTTGGCTCTGAAAGCTCCACAA TGACAACTGATGGTGTTTTTAGTACAACATGGCTCAACAATCTTCCAAAGTCAATGGATTCACCATTGTTGCCCCAAGAGAATGCACATCGAAACAATTG TGATGCACACCGATTCTTTACGCAACTCAGCTCAGTTCCCAAATCTGTTTTGCAATTATTAGGTTCTTCATACATAATGCGCTCCACTGCTTGGGAGATG TATGGCAGTGCTCCTCTTGCTCGAATAAATTCGCTGGTTTATGCCACTTGCTTTGCTGATGCTTCAAGTTCATCTGATGCAGCTTCAGTACATGCAAAGC TCATCCAGCATTTAGCAGTATTTCGAGGATACAAAGAGGCCTTTGCTGCTCTTAAAGTAGCTGAAGAGAAGTTCTTAACTGTCTCAAAATCTGTAATTTT GCTAGTAAAACTGCAGCTACTCCATGAGTGTGCTTTGCATCGAGGAAATCTGAAGCTAGCACAACAAGTATGTGATGAACTTGGAGTTCTGGCATCATCT GTCAGTGGTGTGGACAAAGATCTGAAGACTGAAGCAAGCCTTCGCCATGCTCGCACATTGCTTGCAGCAAATCAATTCAGCCAGGCTGCCGCTGTTGCAC ATTCTCTCTTTTGCATGTGTTACAAATTCAATATGCAGGTTCAGAATGCCACTGTTCTTCTTTTGCTGGCAGAAATTCACAAGAAATCAGGCAATGCTGT TTTAGGCCTTCCTTATGCATTAGCAAGCCTCTCATTTTGCCAGTCATTTAATTTGGATCTACTCAAGGCATCAGCCACTCTTACCTTGGCTGAGTTGTGG CTCTCATTAGGATCAAATCATGCAAAGAGGGCTCTGACCCTTATACATGGGGCTCTACCCATGATTCTTGGTCATGGAGGGTTGGAGCTCCAAGCGAGGG CTCAGATCACTGAAGCAAAATGCTATTTATCTGATCCAAGCTATTCAGTTTTTGAAGATTCTGAGGTTGTGTTAGATCTTTTGAGGCAAGCTTCTGATGA GCTTCAAGTGTTGGAGTATCATGAGTTGGCTGCGGAAGCTTTCTATTTGATGGCCCATGTATTTGACAAACTTGGGCAACTTGAGAGGAGAGAAGAAGCT GCAGCTTCATTCAAGGAACACATGATGGCTCTAGAGAATCCTCAGGATGAGGATGATCCTTTACTGAACATGTTGTGA
AA sequence Show only first row Show all	>Potri.004G081200.1 pacid=42794738 polypeptide=Potri.004G081200.1.p locus=Potri.004G081200 ID=Potri.004G081200.1.v4.1 annot-version=v4.1 MASPPQPPPMTNAFALTPHKVSVCLLLQTYALPAQTTPPFPFSSVSQHNRLGLYLLALTKSYDDILEPKLEELLNQLKEISGSLGHWLIDHLTSRLSSLS APDDLFSFFTEMRGILGGLDSVVMEDNQVILDPNSNLGLFLRRCILTFNLLSFEGLCHLLTNIGSYCKEAMSSCMPYETRLLDESSNDLETLSEYENMDL ENFMFGKVNEEIEARKQASERVPFHLHGPKALSGLVEDIEVVADPSSKHGDKCGETSAYVHPPGNELRDVDPYGEIFLRTNWQVQGYLMEQADAIEKHDS SFSLNSFELVLRQIKKLAPELHRVHFLRYLNSLYHDDYFAALDNLHRYFDYSAGAEGFDSAPSSSGSNSSGRYEIGLIYLGMMHLHFGHPKQALQVLTEA VRFSQQQSNESCLAYTLAAICNVLSEFGCSSSAGVLGTSFSPITSMDTSLSVGQQLFVLLRESLKRAESLKLKRLVASNHLALAKFDLLHVQRPLLSFGP KASMKLRTFPINVCKELRLCSHLISEFGSESSTMTTDGVFSTTWLNNLPKSMDSPLLPQENAHRNNCDAHRFFTQLSSVPKSVLQLLGSSYIMRSTAWEM YGSAPLARINSLVYATCFADASSSSDAASVHAKLIQHLAVFRGYKEAFAALKVAEEKFLTVSKSVILLVKLQLLHECALHRGNLKLAQQVCDELGVLASS VSGVDKDLKTEASLRHARTLLAANQFSQAAAVAHSLFCMCYKFNMQVQNATVLLLLAEIHKKSGNAVLGLPYALASLSFCQSFNLDLLKASATLTLAELW LSLGSNHAKRALTLIHGALPMILGHGGLELQARAQITEAKCYLSDPSYSVFEDSEVVLDLLRQASDELQVLEYHELAAEAFYLMAHVFDKLGQLERREEA AASFKEHMMALENPQDEDDPLLNML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06590			unknown protein		Potri.004G081200 [exp]	0	1
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Potri.001G366700 [exp]	5.19	0.7045
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	5.74	0.7149
AT1G01880			5'-3' exonuclease family prote...		Potri.014G077300 [exp]	8.60	0.7114
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.002G177600 [exp]	12.84	0.6490	Pt-GIF2.1
AT2G22530			Alkaline-phosphatase-like fami...		Potri.007G010600 [exp]	13.03	0.6785
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.011G090200 [exp]	15.71	0.6424
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	16.79	0.6774	ARL1.3
AT2G23093			Major facilitator superfamily ...		Potri.007G052700 [exp]	19.39	0.6797
AT3G27530		MAG4, GC6	MAIGO 4, golgin candidate 6 (....		Potri.001G343500 [exp]	24.91	0.6391
AT2G27900			unknown protein		Potri.009G002900 [exp]	27.00	0.6639

Compare expression of checked genes

Potri.004G081200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.