Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73370 1235 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 1224 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 967 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 925 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 922 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 909 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT5G11110 145 / 2e-35 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT1G04920 137 / 6e-33 ATSPS3F sucrose phosphate synthase 3F (.1) AT4G10120 137 / 9e-33 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G20280 133 / 1e-31 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G139100 [exp] 1526 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.015G029100 [exp] 1281 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 1264 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.002G202300 [exp] 967 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.006G136700 [exp] 934 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 928 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G025100 [exp] 148 / 3e-36 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.006G064300 [exp] 143 / 9e-35 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.013G095500 [exp] 142 / 2e-34 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007372 [exp] 1343 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 1343 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10041979 [exp] 1185 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10017984 [exp] 1111 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10001468 [exp] 946 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 932 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 901 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10010308 [exp] 863 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10013417 [exp] 774 / 0 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 362 / 4e-118 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF00862 [poplar] [flax] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Potri.004G081300.3 pacid=42794151 polypeptide=Potri.004G081300.3.p locus=Potri.004G081300 ID=Potri.004G081300.3.v4.1 annot-version=v4.1 ATGGCAACCTTGAAGAGGTCTGACTCTATAGCTGACAACATGCCAGAAGCCTTGAAACAAAGCAGGTACCACATGAAGAGATGTTTTGCCAAGTACATAG AAAAGGGAAGGAGAACAATGAAGCTTCAGCAATTACTTGATGAAATGGAGAATGTTATAGATGATCAGGTTGAAAGAACCAGGGTCCTGCAAGGTTTACT AGGTGACATTTGGTTTTCTATTCAGGAAGCAGTTGTTAATCCACCTTATGTAGCTTTATCCATTAGACCAAGCCCTGGATTCTGGGAATTTGTGAAGGTG AACTCTGCTGATCTTTCGGTTGAGGGCATCACTGCTACAGACTACTTGAAATTCAAGGAAATGATATATGATGAGAACTGGGCAAAGGATGCTAATGCAT TGGAAGTCGATTTCGGAGCATTTGATTTCTCTGTGCCTCACTTGACCTTATCTTCTTCCATTGGAAATGGACTTGGTTTTGTTTCTAAGTTTGCAACTTC AAAGCTAAGCGGCCGCCTGGAGAGTGCTCAGCCTCTGGTGGATTACTTGCTATCTCTGAATCATGAAGGAGAAAAACTAATGATAAATGAGACCCTTAGC TCTGTCAGAAAGCTTCGGATGGCACTGATAGTTGCTGAAGCTTACCTCTCGGGACTTCCGAAGGACACCCAATATCAGAATTTTGAGACAAGCTTCAAAG CGTGGGGCTTCGAGAAGGGATGGGGTAATACTGCAGAGAGAGTGAAGGAGACGATGAGATGTCTCTCAGAAGTTCTCCAAGCACCGGATCCATTGAACAT GGAGAATTTTTTTAGCAGGCTGCCAACTGTATTCAATGTTGTAATTTTCTCTCCTCACGGTTACTTTGGTCAAGCAGATGTCCTCGGTTTGCCAGATACT GGTGGACAGGTGGTCTACATTCTAGACCAAGTTAAAGCCTTGGAAGATGAATTGCTGCTTAGGATTGAGCAACAAGGACTTAACATAAAACCTCAAATTG TTGTGGTCACGCGACTCATTCCTGAAGCTCGGGGAACAAAGTGCAACCAGGAATTGGAATCGATTAATGGCACCAAGCATTCAAACATCCTTAGGGTGCC ATTCAGCATAGAAAATAAGGTCCTCCGCCAGTGGGTTTCTCGTTTCGATGTCTATCCCTATCTCGAGAAGTTTACTCAGGATGTTATAACCAAGCTCCTA GACCTCATGCAAAGAAAGCCGGATCTCATCATCGGAAACTACACTGATGGGAATTTAGCAGCAACTCTCATGGCTAGTAAACTTGGGATAACTCAGGCAA CTATTGCACATGCTTTGGAGAAGACGAAGTACGAAAATTCAGATGTCAAGTGGAAGGAATTAGACCCTAAGTACCACTTCTCATGCCAATTTATGGCTGA TACAATTGCCATGAATGCAACCGATTTCATCATAGCAAGTACATATCAGGAGATTGCAGGAAGCAAAGATAGACCTGGGCAGTATGAGAGCCATGCTTCA TTCACACTGCCAGGGCTCTGCAGAGTCGTATCTGGCATCGACGTCTTTGATCCGAAGTTCAACATTGCTGCACCTGGGGCTGATCAATCTGTCTATTTCC CATACACGGAGAAACAAAGTCGATTCACAAAGTTTCATCCTGCCATTGAAGAATTGTTGTATAGCAAAGTGGTCAATGATGAACACATTGGATATTTAGA GGACAAGAAGAAGCCTATTATCTTCTCGATGGCAAGGCTCGATACAGTGAAGAACCTTACTGGACTAACCGAGTGGTATGGGAAGAACAAGAGACTGAGA GGCTTAGTTAATCTTGTTATAGTTGGTGGATTCTTTGATCCAAACAAATCTAAAGACAGAGAAGAAATGGCTGAAATAACGAAGATGCATGGATTGATAA AGAAGTACCGACTCAACGGTCAGTTCCGATGGATAGCAGCTCAGACTGATAGAAATCGCAATGGAGAACTGTACCGTTGTATCGCTGATACAAAGGGAGC TTTCGTGCAGCCAGCTCTCTATGAAGCATTTGGACTCACAGTCATCGAGGCTATGAACTGCGGATTGCCCACCTTTGCAACCAACCAAGGAGGCCCAGCT GAAATAATCGTTGACGGGATCTCAGGATTCCATATTGATCCCCAAAATGGAGATGAGTCGAGCAACATTATCGCCGATTTCTTTGAGAAGTGCAAGGTGG ATCCAGGATACTGGAATAAGTTTGCGGCAGAAGGGTTGAAACGGATAAACGAATGCTATACATGGAAGATCTATGCAAAGAAATTGTTGAACATGGGTAA CATGTATAGTTTCTGGAGGCAGCTCAACAAGGAGCAGAAACTAGCCAAGCAGAGATACATCCAGATGCTCTATAATCTTCAATTCAGGAGATTGGTACGC ACTCTCTACTTTCTACTTACAGCTTTACAATCAACAATAACAGGACTCCTGAAAATTTTCACATGCCCCTCATGTAACACTTCTAGGCAATGA
AA sequence Show only first row Show all	>Potri.004G081300.3 pacid=42794151 polypeptide=Potri.004G081300.3.p locus=Potri.004G081300 ID=Potri.004G081300.3.v4.1 annot-version=v4.1 MATLKRSDSIADNMPEALKQSRYHMKRCFAKYIEKGRRTMKLQQLLDEMENVIDDQVERTRVLQGLLGDIWFSIQEAVVNPPYVALSIRPSPGFWEFVKV NSADLSVEGITATDYLKFKEMIYDENWAKDANALEVDFGAFDFSVPHLTLSSSIGNGLGFVSKFATSKLSGRLESAQPLVDYLLSLNHEGEKLMINETLS SVRKLRMALIVAEAYLSGLPKDTQYQNFETSFKAWGFEKGWGNTAERVKETMRCLSEVLQAPDPLNMENFFSRLPTVFNVVIFSPHGYFGQADVLGLPDT GGQVVYILDQVKALEDELLLRIEQQGLNIKPQIVVVTRLIPEARGTKCNQELESINGTKHSNILRVPFSIENKVLRQWVSRFDVYPYLEKFTQDVITKLL DLMQRKPDLIIGNYTDGNLAATLMASKLGITQATIAHALEKTKYENSDVKWKELDPKYHFSCQFMADTIAMNATDFIIASTYQEIAGSKDRPGQYESHAS FTLPGLCRVVSGIDVFDPKFNIAAPGADQSVYFPYTEKQSRFTKFHPAIEELLYSKVVNDEHIGYLEDKKKPIIFSMARLDTVKNLTGLTEWYGKNKRLR GLVNLVIVGGFFDPNKSKDREEMAEITKMHGLIKKYRLNGQFRWIAAQTDRNRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPA EIIVDGISGFHIDPQNGDESSNIIADFFEKCKVDPGYWNKFAAEGLKRINECYTWKIYAKKLLNMGNMYSFWRQLNKEQKLAKQRYIQMLYNLQFRRLVR TLYFLLTALQSTITGLLKIFTCPSCNTSRQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.004G081300 [exp]	0	1
					Potri.001G248708 [exp]	1.73	0.9904
AT2G15680		AtCML30	calmodulin-like 30, Calcium-bi...		Potri.009G102500 [exp]	2.23	0.9786
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Potri.008G122100 [exp]	2.44	0.9778
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.008G101000 [exp]	2.82	0.9893	Pt-GAS1.1
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200600 [exp]	4.24	0.9863
AT1G29640			Protein of unknown function, D...		Potri.011G076900 [exp]	5.65	0.9841
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G100801 [exp]	7.74	0.9659
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Potri.013G074000 [exp]	8.06	0.9651
					Potri.015G106725 [exp]	8.71	0.9519
AT1G56010	NAC	NAC1, ANAC021, ...	Arabidopsis NAC domain contain...		Potri.005G098200 [exp]	8.94	0.9709

Compare expression of checked genes

Potri.004G081300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.