Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17240 545 / 0 SDG40 SET domain group 40 (.1) AT3G07670 63 / 2e-10 Rubisco methyltransferase family protein (.1) AT5G14260 58 / 8e-09 Rubisco methyltransferase family protein (.1.2.3) AT3G56570 56 / 6e-08 SET domain-containing protein (.1) AT1G14030 52 / 6e-07 Rubisco methyltransferase family protein (.1) AT2G18850 49 / 7e-06 SET domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169300 [exp] 63 / 2e-10 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 59 / 3e-09 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.017G066500 [exp] 57 / 3e-08 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.004G135700 [exp] 56 / 6e-08 AT3G56570 446 / 9e-153 SET domain-containing protein (.1) Potri.008G134200 [exp] 44 / 0.0002 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035757 [exp] 559 / 0 AT5G17240 485 / 1e-168 SET domain group 40 (.1) Lus10026538 [exp] 83 / 2e-16 AT3G56570 505 / 2e-175 SET domain-containing protein (.1) Lus10013825 [exp] 74 / 5e-14 AT3G56570 439 / 9e-152 SET domain-containing protein (.1) Lus10012309 [exp] 65 / 7e-11 AT3G07670 756 / 0.0 Rubisco methyltransferase family protein (.1) Lus10022333 [exp] 60 / 3e-09 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10041585 [exp] 57 / 2e-08 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10036780 [exp] 50 / 3e-06 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016087 [exp] 50 / 3e-06 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10040345 [exp] 47 / 3e-05 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain PF09273 [poplar] [flax] Rubis-subs-bind Rubisco LSMT substrate-binding
Representative CDS sequence Show only first row Show all	>Potri.004G081400.2 pacid=42795475 polypeptide=Potri.004G081400.2.p locus=Potri.004G081400 ID=Potri.004G081400.2.v4.1 annot-version=v4.1 ATGGAAGATGCAGGGCAAGACGAAGGTTTTGAAAGATTTCTAAAATGGGCAGCAAACCTTGGAATCTCAGATTGCACCACGAACCTTTCTCTTCACCCTC AAAGCCCCACTTCTTGTTTAGGCCATTCCCTCACTGTCTCTCACTTCCCTGATGCAGGAGGGAGAGGTTTAGCTGCTGTTAGGGATTTAAAGAAAGGAGA GTTGGTACTTAGAGTTCCAAAATCTGTTTTGATCACAAGAGATAGTTTATTGAAAGATGAGAAACTTTGTTCTTTTGTCAATAATAATACCTACTCTTCT CTCTCCCCAACCCAGATATTGGCTGTGTGTTTGTTATACGAAATGGGTAAAGGGAAGAGTTCATGGTGGTACCCTTACTTGATGCATCTGCCACGCAGTT ATGACGTGCTAGCAAGTTTCAGTGAGTTTGAAATGCAAGCTTTGCAAGTGGATGATGCTATCTGGACTGCAGAAAAGGCTGTGTCGAAGGCGAAATCAGA GTGGAAAGAAGCTAATTCACTGATGGATGCCCTTAAGCTTAAACCACAACTTCTCACATTCAGGGCTTGGATTTGGGCCTCAGCAACTATATCCTCACGG GCATTGCACATACCATGGGATGAAGCTGGGTGTTTATGTCCAGTTGGAGACTTGTTTAATTATGCTGCTCCTGGAGAGGAGTCAAATGACCTTGAAAACG TGGTGCATTGGATGAATGCCTCTTCTTTGGAAGATTCTTCTTTGTCAAATGGGGAAACCACAGATGACTTTATTGGAGATCAACCAGATATAGGTTTGGA GCGTTTGACAGATGGTGGCTTCGATGAAAACATGGCTGCATATTGCTTTTATGCCAGGAAAAATTACAAGAAGGGAACTCAGGTTCTCCTAGGCTATGGA ACATACACAAATTTGGAGCTTCTTGAACACTACGGGTTTCTCCTTAATGAAAATCCAAATGACAAAGTTTTTATTCCCTTGGAACCTAGCATGTATTCCT TCATTTCATGGCCCAAGGTATCGATGTATATCCACCAAGACGGGAAGCCATCTTTTGCCTTATTGTCTGCTTTGCGTTTATGGGCAACCCCGCCAAATCA GAGGAGATCCATCAGTCACCTGGTTTACTCTGGCTCTCGACTTTCGGTATACAATGAGATATCTGTCTTGAAATGGATATCAAAGAACTGCGCCCTGATT TTGAGTAATTTGCCGACAGTAATTGAAGAAGACAGCTTGCTGTTATCCACCATCAACAAAATCGAGAATTTTGACAAGCCTACAGAGCTCGGGAAGCTGC TGTGCGCTTCCGGTGGTGAGGCACGTGCTTTCTTAGAAGCCAGTGATCTGCAGAAAGGGAAAAATGGTTCTGAGCTGATGTTTTCTGGCAAGACAAAAAG GGTCATAGAGAGGTGGAAACTAGCAGTTCAATGGAGGATCAGCTATAAGAAAACCCTGATTGATTGTATTTCCTATTGTACTGTAACTATCAATTCTCTC TCAAGTCAAACTATCTTGGCCATGAGAACTAAATAA
AA sequence Show only first row Show all	>Potri.004G081400.2 pacid=42795475 polypeptide=Potri.004G081400.2.p locus=Potri.004G081400 ID=Potri.004G081400.2.v4.1 annot-version=v4.1 MEDAGQDEGFERFLKWAANLGISDCTTNLSLHPQSPTSCLGHSLTVSHFPDAGGRGLAAVRDLKKGELVLRVPKSVLITRDSLLKDEKLCSFVNNNTYSS LSPTQILAVCLLYEMGKGKSSWWYPYLMHLPRSYDVLASFSEFEMQALQVDDAIWTAEKAVSKAKSEWKEANSLMDALKLKPQLLTFRAWIWASATISSR ALHIPWDEAGCLCPVGDLFNYAAPGEESNDLENVVHWMNASSLEDSSLSNGETTDDFIGDQPDIGLERLTDGGFDENMAAYCFYARKNYKKGTQVLLGYG TYTNLELLEHYGFLLNENPNDKVFIPLEPSMYSFISWPKVSMYIHQDGKPSFALLSALRLWATPPNQRRSISHLVYSGSRLSVYNEISVLKWISKNCALI LSNLPTVIEEDSLLLSTINKIENFDKPTELGKLLCASGGEARAFLEASDLQKGKNGSELMFSGKTKRVIERWKLAVQWRISYKKTLIDCISYCTVTINSL SSQTILAMRTK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17240		SDG40	SET domain group 40 (.1)		Potri.004G081400 [exp]	0	1
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.009G106900 [exp]	2.00	0.7284	OST1.1
AT2G14255			Ankyrin repeat family protein ...		Potri.009G029800 [exp]	3.00	0.7034
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	6.92	0.7370
AT1G09815		POLD4	polymerase delta 4 (.1)		Potri.019G042900 [exp]	9.16	0.6884
AT2G40830		RHC1A	RING-H2 finger C1A (.1.2.3)		Potri.006G032100 [exp]	12.04	0.6903	RHC1.2
AT4G32870			Polyketide cyclase/dehydrase a...		Potri.006G237000 [exp]	13.41	0.6159
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G244700 [exp]	19.07	0.6870
AT2G24030			zinc ion binding;nucleic acid ...		Potri.006G182601 [exp]	19.49	0.7008
AT4G19150			Ankyrin repeat family protein ...		Potri.003G103400 [exp]	19.74	0.6790
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	25.49	0.6488

Compare expression of checked genes

Potri.004G081400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.