Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17230 260 / 1e-86 PSY PHYTOENE SYNTHASE (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138900 [exp] 273 / 2e-91 AT5G17230 630 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.002G056800 [exp] 256 / 3e-85 AT5G17230 555 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.005G205800 [exp] 254 / 1e-84 AT5G17230 549 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Potri.001G007700 [exp] 228 / 2e-74 AT5G17230 443 / 4e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G217950 [exp] 218 / 2e-70 AT5G17230 443 / 5e-155 PHYTOENE SYNTHASE (.1.2.3) Potri.003G218000 [exp] 213 / 1e-68 AT5G17230 411 / 2e-142 PHYTOENE SYNTHASE (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020729 [exp] 254 / 6e-85 AT5G17230 491 / 7e-174 PHYTOENE SYNTHASE (.1.2.3) Lus10029809 [exp] 254 / 1e-83 AT5G17230 491 / 3e-172 PHYTOENE SYNTHASE (.1.2.3) Lus10001416 [exp] 247 / 1e-81 AT5G17230 545 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10001050 [exp] 241 / 2e-79 AT5G17230 535 / 0.0 PHYTOENE SYNTHASE (.1.2.3) Lus10039186 [exp] 219 / 5e-71 AT5G17230 442 / 1e-154 PHYTOENE SYNTHASE (.1.2.3) Lus10013753 [exp] 219 / 6e-71 AT5G17230 446 / 4e-156 PHYTOENE SYNTHASE (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [poplar] [flax] Terp_synthase PF00494 [poplar] [flax] SQS_PSY Squalene/phytoene synthase
Representative CDS sequence Show only first row Show all	>Potri.004G081466.2 pacid=42795249 polypeptide=Potri.004G081466.2.p locus=Potri.004G081466 ID=Potri.004G081466.2.v4.1 annot-version=v4.1 ATGATATCGGAAGGTTCTATGGATGTAAGAGACGATGACTCTCAAGACAGAAAATCAGCCTTTTGCTTCTTTCTTACAATGTTTTCTGCACATGTAGTGT GGTGTAGGAGGACCGACGAGCTGGTTGATGGGCCTAATGCTTCACGCATTGCACCGACAGCTTTAGATAGGTGGGAGGCAAGGTTGGAAGATCTTTTCCA AGGACGTCCATTCGATATGATGGATGCTGCTCTAGCAGACACGGTGGCTAAATTTCCTGTTGACATTCAGCCATTCAAAGATATGATTGAAGGAATGAGG ATGGATCTGACGAAATCAAGATACAAAAACTTCGATGAGCTCTATCTTTACTGTTATTATGTTGCAGGGACTGTTGGACTATTGAGTGTTCCAGTAATGG GTATTGCACCTGAATCTCAGGCACCAACCGAGAGTGTTTATAATGCTGCCTTGGCATTAGGGATAGCTAATCAGCTCACCAACATACTCAGGGATGTCGG AGAAGAGTAA
AA sequence Show only first row Show all	>Potri.004G081466.2 pacid=42795249 polypeptide=Potri.004G081466.2.p locus=Potri.004G081466 ID=Potri.004G081466.2.v4.1 annot-version=v4.1 MISEGSMDVRDDDSQDRKSAFCFFLTMFSAHVVWCRRTDELVDGPNASRIAPTALDRWEARLEDLFQGRPFDMMDAALADTVAKFPVDIQPFKDMIEGMR MDLTKSRYKNFDELYLYCYYVAGTVGLLSVPVMGIAPESQAPTESVYNAALALGIANQLTNILRDVGEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081466 [exp]	0	1
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Potri.018G086700 [exp]	3.31	0.8346
AT2G20770		GCL2	GCR2-like 2 (.1)		Potri.013G134700 [exp]	8.94	0.8589
AT5G57770			Plant protein of unknown funct...		Potri.018G099000 [exp]	9.79	0.8248
AT1G67265		DVL3, RTFL21	DEVIL 3, ROTUNDIFOLIA like 21 ...		Potri.004G102950 [exp]	12.64	0.7909
AT4G02550			unknown protein		Potri.010G215600 [exp]	19.44	0.8628
AT2G03670		CDC48B	cell division cycle 48B (.1)		Potri.001G128700 [exp]	23.02	0.8050	Pt-CDC48.1
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	23.36	0.8311
AT4G02550			unknown protein		Potri.006G196716 [exp]	27.71	0.8428
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.005G126700 [exp]	29.15	0.8274
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Potri.002G151300 [exp]	29.93	0.8186	GA20ox2-1

Compare expression of checked genes

Potri.004G081466 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.