Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27190 747 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 699 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G28450 617 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G48380 459 / 6e-155 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT1G55610 253 / 1e-72 BRL1 BRI1 like (.1.2) AT5G07280 253 / 2e-72 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 251 / 4e-72 BRL3 BRI1-like 3 (.1) AT4G39400 230 / 1e-64 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT2G02220 227 / 7e-64 ATPSKR1 phytosulfokin receptor 1 (.1) AT2G01950 227 / 2e-63 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138600 [exp] 968 / 0 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 730 / 0 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G074400 [exp] 722 / 0 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G177900 [exp] 461 / 6e-156 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 358 / 6e-116 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.010G178050 [exp] 335 / 4e-107 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 333 / 5e-106 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.015G141200 [exp] 254 / 1e-72 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.012G139000 [exp] 248 / 8e-71 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030811 [exp] 771 / 0 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10013288 [exp] 427 / 9e-148 AT1G27190 390 / 2e-133 Leucine-rich repeat protein kinase family protein (.1) Lus10002147 [exp] 322 / 2e-101 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10008743 [exp] 320 / 4e-101 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030812 [exp] 235 / 7e-73 AT3G28450 252 / 6e-80 Leucine-rich repeat protein kinase family protein (.1) Lus10006817 [exp] 248 / 1e-70 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 246 / 3e-70 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10014996 [exp] 239 / 1e-67 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10038875 [exp] 238 / 3e-67 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033533 [exp] 233 / 1e-65 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G081700.1 pacid=42794272 polypeptide=Potri.004G081700.1.p locus=Potri.004G081700 ID=Potri.004G081700.1.v4.1 annot-version=v4.1 ATGATGAAGAAGAATACCCTCATTTCCTTCTCTTTACTATTCTCCCTCTTTGCCTTCTCTTTCGCCATAGAAGATGATGTCACCTGCCTTGAAGGAGTCA AGAACTCCTTTACAGACCCCCTGGGTCGACTCACTTCTTGGGATTTCAACAACAACTCTGTTGCTTACATTTGTAAGCTCAACGGTGTTTCTTGCTGGAA CGAGAAGGAGAACCGAATCATCAGTCTTCAATTGCCGCTGTTTCAGCTCTCAGGCAAGTTACCGGAGTCTCTCAAGTACTGTCATAGCTTAACAACGCTG GATCTTTCAAACAATGATCTTTCTGGGCCGATCCCACCTGAGATTTGTAACTGGTTGCCTTATGTAGTCACTCTTGATCTCTCCGGGAACAAGTTTTCAG GTCCGATCCCACCGGAGATTGTGAATTGTAAGTTCTTGAATAGTTTGATTTTGAGTGGAAATAAGCTGACTGGTTCGATTCCTTATGGTTTTGGTCGTCT TGACCGGTTGAAAAGGTTTTCAGTTGCTTCTAATGATCTGACCGGTTCGATACCGGAGGAGTTGGGGGTTTTTCCGAAGGATGCATTTGATGGGAATGAA GGGTTGTGCGGTAAGCCTCTAGGGAAGTGTGGTGGGTTGAGTAGTAAGAGTCTTGGCATTATAATTGTTGCTGGGGTTATTGGTGCTGGTGGGTCTTTGA TTTTGGGGTTTGTGATTTGGTGGTGGTTGTTTGTTAAGGGAAAAAGCGGTGGTGGCAGTGGCGGCGTCGGCGGAAGTGGTGGTAAGGGTGATGATTCTAG TTGGATTGGGTTATTGAGGTCACATAAGCTGGTTCAAGTGACATTGTTTCAAAAACCTATTGTTAAGATCAAGTTGGCTGATATTTTGGCTGCTACTAAT AGTTTTGATTTTGAGAATGTTGTGATTTCGACGAGGACTGGGGTTTCGTACCAGGCGGATTTGCCTGATGGATCTAGTCTTGCTATTAAGAGGCTTAATA CTTGTAAGCTTGGTGAGAAGCAATTTAGGGGTGAAATGAATAGGTTAGGGCAGCTTAGGCATCCGAATTTGGTACCATTGTTGGGTTTTTGTGTTGTTGA GGTGGAAAAGCTTTTGGTATATAAGCATATGCCTAACGGGACTTTGTATTCTCAATTGCATGGGAGTGGATTTGGCATTGGTCAAACTAGTGTTTTGGAT TGGCCTACGAGGGTGAGGGTTGGTGTTGGGGCGGCAAGAGGGCTTGCTTGGCTTCACCATGGGTGCCATCCACCATATATTCACCAGTATATTAGTTCCA ACGTGATACTTCTTGATGATGATTTTGATGCAAGGATTACTGACTTTGGGTTGGCAAGGTTGATTAGTTCTCCTGATTCTAATGATAGTTCTTTTGTCCA TGGAGATCTGGGGGAGTTTGGATATGTTGCTCCTGAGTATTCCAGCACTATGGTTGCATCGTTGAAAGGTGATGTTTATGGCTTTGGTGTTGTGCTTTTG GAGTTGGTCAGTGGACAAAAACCTTTAGATGTCAGTAATGCTGAGGAAGGATTCAAAGGGAATTTGGTGGATTGGGTTAATCAATTGGCGAGCATTGGTC GAAGCACAGATGCCATTGACAAAGCTCTAGTTGGGAAAGGTCATGATGATGAAATTATGCAGTTCTTGAAGGTTGCTTGGAGCTGTGTTGTTTCCAGGCC CAAGGATAGACCTACAATGTACCAAATCTATGAGTCTCTGAAGGGCATGGCTGAGAAACATGGTTTCTCTGACAAATACGATGAATTCCCACTGATCTTT GGCAAACAAGATCCTGATTATAAGGAGTAG
AA sequence Show only first row Show all	>Potri.004G081700.1 pacid=42794272 polypeptide=Potri.004G081700.1.p locus=Potri.004G081700 ID=Potri.004G081700.1.v4.1 annot-version=v4.1 MMKKNTLISFSLLFSLFAFSFAIEDDVTCLEGVKNSFTDPLGRLTSWDFNNNSVAYICKLNGVSCWNEKENRIISLQLPLFQLSGKLPESLKYCHSLTTL DLSNNDLSGPIPPEICNWLPYVVTLDLSGNKFSGPIPPEIVNCKFLNSLILSGNKLTGSIPYGFGRLDRLKRFSVASNDLTGSIPEELGVFPKDAFDGNE GLCGKPLGKCGGLSSKSLGIIIVAGVIGAGGSLILGFVIWWWLFVKGKSGGGSGGVGGSGGKGDDSSWIGLLRSHKLVQVTLFQKPIVKIKLADILAATN SFDFENVVISTRTGVSYQADLPDGSSLAIKRLNTCKLGEKQFRGEMNRLGQLRHPNLVPLLGFCVVEVEKLLVYKHMPNGTLYSQLHGSGFGIGQTSVLD WPTRVRVGVGAARGLAWLHHGCHPPYIHQYISSNVILLDDDFDARITDFGLARLISSPDSNDSSFVHGDLGEFGYVAPEYSSTMVASLKGDVYGFGVVLL ELVSGQKPLDVSNAEEGFKGNLVDWVNQLASIGRSTDAIDKALVGKGHDDEIMQFLKVAWSCVVSRPKDRPTMYQIYESLKGMAEKHGFSDKYDEFPLIF GKQDPDYKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27190			Leucine-rich repeat protein ki...		Potri.004G081700 [exp]	0	1
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.002G023900 [exp]	2.23	0.8207
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.012G133400 [exp]	5.47	0.7543
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.006G121400 [exp]	10.24	0.7705
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.005G219600 [exp]	12.24	0.7706
AT5G14210			Leucine-rich repeat protein ki...		Potri.001G333300 [exp]	13.49	0.7311
AT1G78210			alpha/beta-Hydrolases superfam...		Potri.002G097400 [exp]	20.49	0.6640
					Potri.019G129820 [exp]	26.83	0.7610
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Potri.010G019000 [exp]	29.52	0.7842
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Potri.003G087800 [exp]	29.93	0.7264	Pt-TOM2.1
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.005G116800 [exp]	31.28	0.7456

Compare expression of checked genes

Potri.004G081700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.