Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54230 855 / 0 SUA suppressor of abi3-5 (.1.2) AT4G00830 64 / 3e-10 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G34140 61 / 4e-09 D111/G-patch domain-containing protein (.1.2.3) AT5G61030 59 / 5e-09 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT5G64200 59 / 7e-09 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT5G26610 57 / 2e-08 D111/G-patch domain-containing protein (.1.2.3) AT5G54580 52 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13570 54 / 2e-07 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 53 / 3e-07 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT2G36660 54 / 7e-07 PAB7 poly(A) binding protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138500 [exp] 1503 / 0 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.017G138401 [exp] 394 / 8e-129 AT3G54230 166 / 1e-45 suppressor of abi3-5 (.1.2) Potri.001G319900 [exp] 59 / 8e-10 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.005G165400 [exp] 58 / 1e-08 AT5G64200 202 / 2e-63 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.002G095800 [exp] 57 / 1e-08 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.011G130300 [exp] 55 / 2e-08 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 54 / 3e-08 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G023800 [exp] 56 / 5e-08 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.006G208500 [exp] 53 / 5e-08 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010955 [exp] 1047 / 0 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10031369 [exp] 545 / 2e-177 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10014802 [exp] 63 / 4e-10 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 62 / 1e-09 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003957 [exp] 56 / 6e-08 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10029372 [exp] 56 / 8e-08 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023802 [exp] 56 / 9e-08 AT5G64200 217 / 1e-68 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10021154 [exp] 54 / 3e-07 AT5G61030 188 / 5e-58 glycine-rich RNA-binding protein 3 (.1) Lus10039947 [exp] 54 / 5e-07 AT4G34140 350 / 4e-116 D111/G-patch domain-containing protein (.1.2.3) Lus10002222 [exp] 53 / 6e-07 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.004G081800.6 pacid=42795792 polypeptide=Potri.004G081800.6.p locus=Potri.004G081800 ID=Potri.004G081800.6.v4.1 annot-version=v4.1 ATGGATCCTGGTCGCTATGGCCTTCAGCAAGGATGGGATAATAACAGCGCTCTGGAGGGGTATGGTGCAGTCCATGAGCCTAACTACCGCAGGGGTGGTG GTTCATATGATGAGAGGAGGTTTATCAATGACCGGTATTCAAGGGATAATGGATACCCAAGACATGCCATCCCCCGGAACATTCTAGAGAGAGAGAACTA TCCCCCACCTCCTGCTGTTGATGTTTGGCCTCAATCAAGAAGGAGAAGTTATGAAGAAGAATACCCACTTGATAGGGAGTCAAGGAGACATGAGAGACCA TACTTCGATACTTACCATGATATAGATGCTGTTCATGATCGGGATGGCAACCACAGCATCGACAACTACCGTGATCACGGACTTGATAGGGCTTCTAGGT TTGGGGAACGTGACCGTGATGATTATGCATATGATGATTATGACTATAAGTCACACACTTCTTATCAAAATAGGGAGGATAGCCATGAGAGGGATTATGA ATATGGTAGGCATAGTTATGATTCTGATTATGAAAGAGGCAGCAGGAGAGATGGCAATTGGAGGAGGCGTGGATCCCATGATCGAGAACATGACAAGAGA GGTTTGAGTCAGGAAAAATCTCAGAGTCCACACAGACGGCATGAACGATCTCGGTCTCGTGGATATGATGATCGTCCTAGATCAAGGTCTCCTCGGAGCC GAAGTCATAGCCGAAGTCAAAGGGAGGACAGCTATGATGGTGGCAGGCATGAGAGGAGTGAAAGGAGGAGGGACCGTGAACACAAGCGTCAGCGTGGCCA TTATGACGTGGCCCCATCTGCAACCGTTGTTGTGAAGGGTCTCTCACAGAAGACAACCGAGGAAGATCTTTACCAGATACTTGCTGAGTGGGGACCACTT CGCCATGTTCGTGTAATCAAAGAGAGGAATTCTGGCATCTCCCGTGGATTTGCCTTTATTGATTTTCCTTCTGTGGGAGCAGCATGCACAATGATGGATA GGATTGGGGATGATGGTCTTGTTGTTGATGGCCGAAAGCTTTTCTTTGAGTACAGTAGTAAACCAACTGGGGGGGCAGGTGGGCCTTTTGGTCAAGAGAA ATCTGGTCAGCACAGAAACATCACAGTGCCATCTGATTGGATGTGCACTATCTGTGGTTGTGTCAATTTTGCAAGGCGTACATCCTGCTTTCAGTGCAAT GAGCCACGAACTGATGATGCACCATCAGCAGATATGACTTTATCAAATCCACCATCCTCAGGAAAGAAAGGATTTGAGGCAGGCCCAACTCATGTTTTGG TTGTTCGTGGATTGGATGAAAATGCGGATGAGGAGATGCTTCGCTATGAGTTTTCCAAGCATGCTCCAATTAAGGATCTTCGACTGGTTAGAGACAAGTT TACTCATGTTTCAAGGGGATTTGCCTTTGTACATTTCCATTCGGTTGAGGATGCTACTAAAGCCCTTGATGCGACCAATGGAACCACTCTTGAGAAGAAT GGGCAGATCTTAAGAGTGGCATATGCAAAGAGCATTCTTGGCCCAGGGTCGTCAGGACCATCGCAGTCAAGCAGCTTAGCAGCTGCTGCGATTGAGGCAG CGGCATTTGCACAACAGTATGACGCTGTTGGCTGGGCACCTAAGGAATATAACCCAGATGAAAAACAATCTGTCGGTGGGCAGGAGCAAGCTGGTGGGGA GATTACAGTCCAAAAGGATGGTTCTGCTGCACAATCTGCTTTTGTGTGGGATGAAGCATCTGGTTATTACTATGATGCTGCTTCTGGCTTCTACTTTGAT GGAAATACAGGTCTTTATTATGATGGTAACAGTGGGGTTTGGTACACATATGACCAGCAAACTCAGCAGTACATCCCTTACACGGAGAACAGTGACAATA AAGCTTCTGGTAAACAGTCCGAGAATTCCAAGTCATCTGATGGTTCCAGTAACAGAAAAGTTGTAATTTCTGCACCGGCTGCTACTATAACATCATCCGT GGAGAAGCCTGCCTCGTTACATGATGCAGTCCAGGCTGCTGCTACAGCAGCATTAGCTGCTGAGAAGAAAGAGAAGGAGAAGGCAAAAGAGATAAAACTT GCTTCAAAGAGCAGTATTTTGGCTAACAAGAAGAAAATGAACAACGTATTATCAATGTGGAAGCAAAGGAGTCATGAAGGACAAGCCACCCGTGTGGCTC TTGATGATAGTCACCCATCTGTTCCAGCTGATGATAGGCTCTTTTCAGCTGGGCAATCCACAAAGAGCAAGTTTAAATCTGATTCAACAACCACAAAGGA GAACACTATGTCCAGTTCAGGAGTTGCCGCAACCCCATCTGCCCAAACTACTGGTTTGGAGTCTCCAGTGAAGCCAAGACCTGCGAGCAACAGTTCAGGA GGGACTTTGATGGGAGTTATAAGGGGCTCTGGACGAGGTGTTGTGAAGTCTGATACTTCATATTCTATACCATCTGCTGGTGTTTCTACATCCAATGCTG CCATACCACTAACTATGGCAGGTTCATCAACAAATTCTGATACATTTCCAGCTGCAACTCCTTTTAGGACAGATGCATCTGCGTTGGGCTCTTACACACC ACCTGTTGCTGCTGTGAGTGGAAAGAGGAGATTTTCTGAAATGCCACTGCCTTCTGCTTCTACTCACAAGGAGCAACCACAGACTTCCTACAGGGATCGA GCAGCTGAAAGGAGGAGTTTGTATGGTTCATCTTCTGTGGGAGATGATTTGCCTGACATGGATTCACATCGAGAGTCTGCATTCAAAAGGAGTGCTTTGG ATTCAATGCCATTTCCCCCTGGTGTTGGAGGAGGACGTGGGATTGGAGATGCTCAGAGCTATGAGGTGATTACAGCTGACAAGGCACTTGGCGAGAGCAA TGTAGGCAATCGAATGCTTCGCAATATGGGCTGGCAAGAAGGCTCGGGACTGGGGAAGGATGGAAGTGGAATGATTGAACCAGTCCAAGCTCAAGCCATA GATAGGAGAGCAGGACTTGGGAGTCAGCAGAAGAAGTTGGATCCTAGCCTTGAGGTACAGGCTGGGGATAGTTACAAAACGCTGATTCAAAAGAAGGCCC TTGCCAGGTTCAGGGAGATGTCGTAG
AA sequence Show only first row Show all	>Potri.004G081800.6 pacid=42795792 polypeptide=Potri.004G081800.6.p locus=Potri.004G081800 ID=Potri.004G081800.6.v4.1 annot-version=v4.1 MDPGRYGLQQGWDNNSALEGYGAVHEPNYRRGGGSYDERRFINDRYSRDNGYPRHAIPRNILERENYPPPPAVDVWPQSRRRSYEEEYPLDRESRRHERP YFDTYHDIDAVHDRDGNHSIDNYRDHGLDRASRFGERDRDDYAYDDYDYKSHTSYQNREDSHERDYEYGRHSYDSDYERGSRRDGNWRRRGSHDREHDKR GLSQEKSQSPHRRHERSRSRGYDDRPRSRSPRSRSHSRSQREDSYDGGRHERSERRRDREHKRQRGHYDVAPSATVVVKGLSQKTTEEDLYQILAEWGPL RHVRVIKERNSGISRGFAFIDFPSVGAACTMMDRIGDDGLVVDGRKLFFEYSSKPTGGAGGPFGQEKSGQHRNITVPSDWMCTICGCVNFARRTSCFQCN EPRTDDAPSADMTLSNPPSSGKKGFEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALDATNGTTLEKN GQILRVAYAKSILGPGSSGPSQSSSLAAAAIEAAAFAQQYDAVGWAPKEYNPDEKQSVGGQEQAGGEITVQKDGSAAQSAFVWDEASGYYYDAASGFYFD GNTGLYYDGNSGVWYTYDQQTQQYIPYTENSDNKASGKQSENSKSSDGSSNRKVVISAPAATITSSVEKPASLHDAVQAAATAALAAEKKEKEKAKEIKL ASKSSILANKKKMNNVLSMWKQRSHEGQATRVALDDSHPSVPADDRLFSAGQSTKSKFKSDSTTTKENTMSSSGVAATPSAQTTGLESPVKPRPASNSSG GTLMGVIRGSGRGVVKSDTSYSIPSAGVSTSNAAIPLTMAGSSTNSDTFPAATPFRTDASALGSYTPPVAAVSGKRRFSEMPLPSASTHKEQPQTSYRDR AAERRSLYGSSSVGDDLPDMDSHRESAFKRSALDSMPFPPGVGGGRGIGDAQSYEVITADKALGESNVGNRMLRNMGWQEGSGLGKDGSGMIEPVQAQAI DRRAGLGSQQKKLDPSLEVQAGDSYKTLIQKKALARFREMS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.004G081800 [exp]	0	1
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	1.00	0.9025
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Potri.006G116000 [exp]	2.00	0.8787
AT1G02080			transcription regulators (.1.2...		Potri.002G143000 [exp]	2.44	0.8821
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Potri.001G320300 [exp]	3.87	0.8514	RAD50.1
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	4.24	0.8806
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	5.00	0.8722
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	5.29	0.8710
AT1G77310			unknown protein		Potri.002G078800 [exp]	5.29	0.8516
AT4G24900			unknown protein		Potri.012G098000 [exp]	5.65	0.8498
					Potri.013G071800 [exp]	6.00	0.8720

Compare expression of checked genes

Potri.004G081800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.