Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65880 724 / 0 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G65890 723 / 0 AAE12 acyl activating enzyme 12 (.1) AT1G66120 716 / 0 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 604 / 0 AAE5 acyl activating enzyme 5 (.1) AT5G16340 602 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G20560 590 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT1G68270 588 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G75960 574 / 0 AMP-dependent synthetase and ligase family protein (.1) AT2G17650 557 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G21530 552 / 0 AMP-dependent synthetase and ligase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138350 [exp] 1092 / 0 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138451 [exp] 1058 / 0 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036300 [exp] 904 / 0 AT1G66120 687 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.016G034800 [exp] 897 / 0 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.006G036200 [exp] 882 / 0 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.002G010600 [exp] 622 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 610 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 593 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.019G068001 [exp] 582 / 0 AT5G16340 775 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007369 [exp] 862 / 0 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10020787 [exp] 848 / 0 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 810 / 0 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1) Lus10031367 [exp] 659 / 0 AT1G65890 548 / 0.0 acyl activating enzyme 12 (.1) Lus10016011 [exp] 614 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10028375 [exp] 583 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10039161 [exp] 575 / 0 AT5G16370 781 / 0.0 acyl activating enzyme 5 (.1) Lus10016869 [exp] 550 / 0 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037734 [exp] 550 / 0 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 541 / 0 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.004G082000.1 pacid=42796736 polypeptide=Potri.004G082000.1.p locus=Potri.004G082000 ID=Potri.004G082000.1.v4.1 annot-version=v4.1 ATGGATCAACTACAAAAATGTGATGCAAATTATGTTCCTCTCACCCCTGTAACTTTCTTGAAGAGAGCTAGTGCTGTTTATGCCAACCGCACCTCTGTTA TCTATGAAGGCACCCGCTTCACATGGAGGCAAACTTATGAACGTTGCTGCCGCCTTGCTGATTCCCTCCGGTCCCTTAACGTCGGAAAGAACGATGTTGT GTCCGTGTTGGCTCCAAATATTCCAGCAGTATACGAGATGCATTTCGCTGTGCCTATGGCTGGAGCAGTTCTCAATACTATCAACACAAGGCTAGATGCC AAGAACATAGCCACCATTCTTATCCATTCAGGAGCTAAGGTTTTCTTCGTGGATTGCCAATACAAGGAGTTAGCGGATAAGGCCCTTCGATTCCTGGAAG GCCCTGTGCCATCAATTATTGCTAGTATCGATGACGTTGACACACCTACCGGTGTCCGATTCGGTCAGTTCGAGTATGAACAACTTGTCCAAAGGGGCAA TCCAGGATACACAGGTGAACTAATTCAAGATGAATGGGATCCTATTGCCTTGAATTATACATCAGGAACAACATCTGCTCCGAAAGGAGTTGTTTATAGT CATAGAGGTGCTTATCTTAGCACTCTTAGCCTAATTCTTGGCTGGGAAATGGGAAGTGCGCCTGTTTACTTATGGTCTCTCCCCATGTTCCATTGCAATG GCTGGACATTCACTTGGGGTGTCGCTGCACGCGGCGGAACCAACGTTTGCATACGCAACACCAGTGCTAAAGACATGTACCAAAGCATTGCTGACCATAA GGTGACTCACATGTGTTGTGCACCAATTGTTTTCAACATTCTGCTTGAGGCCAAACCTCATGAGCGCCGCGAAATCACTTCACCGGTCGAAATACTCACA GGAGGTGCGCCCCCACCAGCCTCATTGCTTGAAAAGATTGAGTCTCTCGGATTCCACGTGACGCACGCCTATGGCCTCACTGAGGCTACTGGGCCAGCAC TTGTGTGTGAATGGCAGACTAAGTGGAACAAGCTTCCACAGCAGGATCAGTCAAAACTCAAGGCAAGGCAAGGAATTAGCATACTGACACTTGCCGATGC AGACATTAAGGATTTGGACACCATGGCTAGCATGCCGCGTGATGGCAAGACAATGGGAGAGATTGTCCTAAGAGGGAGCAGTATCATGAAAGGTTACTTC AAGGATCCTGAGGCAACTTCCAAGGCCTTCAGGAATGGATGGTTTGTTACTGGAGATGTTGGTGTCATTCATCCTGATGGATACCTGGAAATTAAGGACA GGTCCAAAGATGTTATTATTTCTGGTGGTGAAAATATCAGCAGCGTAGAATTGGAGTCTGTACTCTATAGACATCCAAGAGTCCTGGAAGCAGCTGTGGT GGCAATGCCACATCCCAAATGGGGAGAAAGTCCCTGTGCATTCATCTCAGTGAAAAAGAATTCCAACGGCGAAACGAATGATGTTAAAGAATCTGAAATT ATTGCTTACTGCAGGAAAAATCTTCCCCGTTTTATGATTCCAAAGAGGGTGGAATTTATGCCTGAGTTACCAAAAACTTCAACAGGAAAAATTCAGAAAT TCCAGTTAAGGGAAGTGGCCAAAAATTTTGCTGTCAATGAGAAGTTGCCCAGCAAGAAACCTACTGGAAGCAGCACGCCTTCAGTTTCTGGTCAAGTCAA TACAGAAGTTCCAGGATATGCTCATGAACAAGTTCTTGCTATGTCTCGTCTTTGA
AA sequence Show only first row Show all	>Potri.004G082000.1 pacid=42796736 polypeptide=Potri.004G082000.1.p locus=Potri.004G082000 ID=Potri.004G082000.1.v4.1 annot-version=v4.1 MDQLQKCDANYVPLTPVTFLKRASAVYANRTSVIYEGTRFTWRQTYERCCRLADSLRSLNVGKNDVVSVLAPNIPAVYEMHFAVPMAGAVLNTINTRLDA KNIATILIHSGAKVFFVDCQYKELADKALRFLEGPVPSIIASIDDVDTPTGVRFGQFEYEQLVQRGNPGYTGELIQDEWDPIALNYTSGTTSAPKGVVYS HRGAYLSTLSLILGWEMGSAPVYLWSLPMFHCNGWTFTWGVAARGGTNVCIRNTSAKDMYQSIADHKVTHMCCAPIVFNILLEAKPHERREITSPVEILT GGAPPPASLLEKIESLGFHVTHAYGLTEATGPALVCEWQTKWNKLPQQDQSKLKARQGISILTLADADIKDLDTMASMPRDGKTMGEIVLRGSSIMKGYF KDPEATSKAFRNGWFVTGDVGVIHPDGYLEIKDRSKDVIISGGENISSVELESVLYRHPRVLEAAVVAMPHPKWGESPCAFISVKKNSNGETNDVKESEI IAYCRKNLPRFMIPKRVEFMPELPKTSTGKIQKFQLREVAKNFAVNEKLPSKKPTGSSTPSVSGQVNTEVPGYAHEQVLAMSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.004G082000 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066400 [exp]	1.00	0.9917
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G014500 [exp]	1.41	0.9891
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.006G141400 [exp]	1.73	0.9883
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066800 [exp]	4.47	0.9842
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.003G066600 [exp]	5.91	0.9788
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.002G120700 [exp]	6.48	0.9759
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G117100 [exp]	6.92	0.9672
					Potri.005G184800 [exp]	7.34	0.9606
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G312800 [exp]	7.48	0.9626
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.002G018300 [exp]	8.77	0.9677	CADL2

Compare expression of checked genes

Potri.004G082000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.