Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66080 318 / 1e-112 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031356 [exp] 349 / 8e-125 AT1G66080 325 / 4e-115 unknown protein Lus10010967 [exp] 347 / 1e-123 AT1G66080 318 / 3e-112 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05603 [poplar] [flax] DUF775 Protein of unknown function (DUF775)
Representative CDS sequence Show only first row Show all	>Potri.004G082100.4 pacid=42794421 polypeptide=Potri.004G082100.4.p locus=Potri.004G082100 ID=Potri.004G082100.4.v4.1 annot-version=v4.1 ATGTTCGGTGTTGTGTTCCCCGACCGCAGTTTCCCTATGGACATATCCGCTTTCTCACAAATCGACACTTTTCACTGGATCCTCGACATGAACACTTTTG TTGGTGAAGCATATGATCAAGTACGAGAAATTTGTATTTTTCTCTTAAACAGCTTTACTCTTCCGCCAGATAAAGCTCTGGCGGTGTATATTCAGTCTCC AGGGTCTGAATTTCAGTTTTGTGGGGCGGTGACAATAACGCGCCCTTCGGCGGTTTTGACGTTGAATTGGCCGGAACCTGGTGGTCAGTTGCAGCTGACA GGGCCAGATACGGCACCCCTTTCGGCGAAAATAGGGGTTTCGGTGGAGGATTTGGCATCATTGCCTTCGCTGGATGTAGCGGCGGAGAAAGGGGTTGAGA GGGTTGCGATGAAAGTTGGGGAGAATTTGTTTAATTATATGCAGTCGTTTTGTGGGGTTGATGGGAGTAAGTTGATTGTTCCTATGGATATTTTGGATAG GTGGTTTAAGAAGTTTCGAGAACGGGCGAAAAGGGATCCTGATTTCTTGAAGAGTTTTCGGTTGTAG
AA sequence Show only first row Show all	>Potri.004G082100.4 pacid=42794421 polypeptide=Potri.004G082100.4.p locus=Potri.004G082100 ID=Potri.004G082100.4.v4.1 annot-version=v4.1 MFGVVFPDRSFPMDISAFSQIDTFHWILDMNTFVGEAYDQVREICIFLLNSFTLPPDKALAVYIQSPGSEFQFCGAVTITRPSAVLTLNWPEPGGQLQLT GPDTAPLSAKIGVSVEDLASLPSLDVAAEKGVERVAMKVGENLFNYMQSFCGVDGSKLIVPMDILDRWFKKFRERAKRDPDFLKSFRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66080			unknown protein		Potri.004G082100 [exp]	0	1
AT3G07090			PPPDE putative thiol peptidase...		Potri.002G241700 [exp]	5.65	0.9523
AT4G02450			HSP20-like chaperones superfam...		Potri.005G199700 [exp]	7.48	0.8929
AT5G35320			unknown protein		Potri.006G070900 [exp]	7.74	0.9434
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.006G088000 [exp]	8.36	0.9522
AT4G02890		UBQ14	Ubiquitin family protein (.1.2...		Potri.017G135600 [exp]	9.16	0.9458	Pt-SUBI.8
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Potri.002G248300 [exp]	11.22	0.9217
AT2G20560			DNAJ heat shock family protein...		Potri.011G057601 [exp]	15.32	0.9421
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Potri.014G116800 [exp]	16.06	0.8701	GOLS2.1
AT5G56000		Hsp81.4, AtHsp9...	HEAT SHOCK PROTEIN 90.4, HEAT ...		Potri.016G003400 [exp]	16.24	0.8671
AT3G53830			Regulator of chromosome conden...		Potri.016G101700 [exp]	17.02	0.8300

Compare expression of checked genes

Potri.004G082100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.