Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66070 174 / 1e-54 Translation initiation factor eIF3 subunit (.1.2) AT5G37475 169 / 2e-52 Translation initiation factor eIF3 subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G138300 [exp] 221 / 6e-73 AT5G37475 200 / 8e-65 Translation initiation factor eIF3 subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008317 [exp] 180 / 9e-56 AT5G37475 209 / 4e-67 Translation initiation factor eIF3 subunit (.1) Lus10028057 [exp] 172 / 8e-54 AT5G37475 226 / 3e-75 Translation initiation factor eIF3 subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08597 [poplar] [flax] eIF3_subunit Translation initiation factor eIF3 subunit
Representative CDS sequence Show only first row Show all	>Potri.004G082200.4 pacid=42795278 polypeptide=Potri.004G082200.4.p locus=Potri.004G082200 ID=Potri.004G082200.4.v4.1 annot-version=v4.1 ATGGAAGATTGGGAGGATGAGCAAGTTCCACCTCTCGTTGCAAAAGACCAGCCTAAAAGTAAATGGGATGATGAAGATGTGGATGAAGATGATGTGAAAG AATCATGGGAGGATGAAGATGAACCTGATCCGGCACCTGTAGTGAAACCTCCTCCTGAAATGGCTCCTAAGAAACCTGCTGTGAAGTCTACTGAAAAGAA GGGAAACACTGCTGATGTAGTAAAGGATCAACCACTTGATCCATTAGCTGAGAAACTTCGCCAGCAAAGGCTGGTGGAAGAAGCTGATTTCAGATCCACT GCAGAATTGTTTGGTAAGAAAGATGATGAAAAGTCGCTTGATAGTTTCATTCCAAAATCTGAAAGTGACTTCTTGGAATACGCAGAACTCATTTCTAATA AACTTCGTCCATTTGAGAAAAGTTACCATTATATCCATTTACTCAAGGCAGTGATGAGACTGTCCATGACTTCCATGAAAGCTGCAGATGCAAAAGAAGT TTCAACTTCTGTGAGTGCAATTGCAAATGAAAAGATAAAAGCTGAGAAAGAAGCCAATACTGGCAAGAAGAAGACAGGTATGTGTTTCCACTATTTTTTT CTTAAACTATCAACAGTAAGCCTAGACATTGTGAACTTGGTTTTTTTTTTTTTTGTTTTCAAGTCATGGATTTTGAAACATTAG
AA sequence Show only first row Show all	>Potri.004G082200.4 pacid=42795278 polypeptide=Potri.004G082200.4.p locus=Potri.004G082200 ID=Potri.004G082200.4.v4.1 annot-version=v4.1 MEDWEDEQVPPLVAKDQPKSKWDDEDVDEDDVKESWEDEDEPDPAPVVKPPPEMAPKKPAVKSTEKKGNTADVVKDQPLDPLAEKLRQQRLVEEADFRST AELFGKKDDEKSLDSFIPKSESDFLEYAELISNKLRPFEKSYHYIHLLKAVMRLSMTSMKAADAKEVSTSVSAIANEKIKAEKEANTGKKKTGMCFHYFF LKLSTVSLDIVNLVFFFFVFKSWILKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66070			Translation initiation factor ...		Potri.004G082200 [exp]	0	1
AT4G29520			unknown protein		Potri.018G067300 [exp]	3.16	0.8928
AT2G46080			unknown protein		Potri.014G088600 [exp]	4.00	0.8840
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Potri.003G082700 [exp]	4.24	0.9095
AT3G46460		UBC13	ubiquitin-conjugating enzyme 1...		Potri.010G206832 [exp]	5.47	0.8681
AT3G18850		LPAT5	lysophosphatidyl acyltransfera...		Potri.009G112307 [exp]	10.67	0.8923
AT5G58110			chaperone binding;ATPase activ...		Potri.006G080900 [exp]	11.95	0.8713
AT4G32150		ATVAMP711, VAMP...	vesicle-associated membrane pr...		Potri.006G256200 [exp]	12.96	0.8487
AT3G52105			unknown protein		Potri.009G061800 [exp]	15.09	0.9061
AT3G17090			Protein phosphatase 2C family ...		Potri.010G146700 [exp]	16.43	0.8562
AT1G30070			SGS domain-containing protein ...		Potri.011G085100 [exp]	25.21	0.8989

Compare expression of checked genes

Potri.004G082200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.