Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37510 1247 / 0 CI76, EMB1467 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G136133 [exp] 1417 / 0 AT5G37510 1252 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2) Potri.017G136950 [exp] 442 / 4e-152 AT5G37510 359 / 3e-120 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020363 [exp] 1188 / 0 AT5G37510 1140 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2) Lus10009539 [exp] 985 / 0 AT5G37510 672 / 0.0 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2) Lus10000183 [exp] 224 / 1e-69 AT5G37510 224 / 3e-70 embryo defective 1467, NADH-ubiquinone dehydrogenase, mitochondrial, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00384 [poplar] [flax] Molybdopterin Molybdopterin oxidoreductase PF09326 [poplar] [flax] NADH_dhqG_C NADH-ubiquinone oxidoreductase subunit G, C-terminal PF10588 [poplar] [flax] NADH-G_4Fe-4S_3 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CL0486 [poplar] [flax] Fer2 PF13510 [poplar] [flax] Fer2_4 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Potri.004G082800.1 pacid=42794125 polypeptide=Potri.004G082800.1.p locus=Potri.004G082800 ID=Potri.004G082800.1.v4.1 annot-version=v4.1 ATGGGGTTAGGCTTGTTAGCTTCAAGGCTCATAAGACCCCAAAAAACCGCCGCCCGAAACCTTCTTCTACGCTCCATCGTGACTAAACCGGAGCTTCAAT CGGCCGAACCCGCAACCACCCCACAACCTGATCTTCCACCACGAACACCACTAGGTGGTGCCAGAGTTCACTTTCCGAACCCGGACGATGCAATCGAAGT GTTTGTTGATGGGTATCCAGTGAAAATCCCGAAAGGGATGACAGTGTTACAAGCTTGTGAAGTTGCTGGTGTTGATATTCCGAGGTTTTGTTATCATAGT CGGTTGTCGATTGCTGGGAACTGTCGTATGTGTCTTGTTGAGGTGGAGAAGAGTCCTAAGCCTGTTGCATCTTGCGCTATGCCTGCTCTTCCTGGAATGA AGATTAAGACAGACACACCTGTGGCAAAGAAAGCACGAGAAGGGGTTATGGAATTTTTGTTGATGAATCACCCATTAGATTGTCCAATTTGTGATCAAGG TGGAGAGTGTGATCTTCAGGATCAGAGTATGGCATTTGGATCTGATCGCGGCCGGTTCACTGAAGTGAAGCGATCAGTTGTTGATAAGAATCTTGGCCCT CTGGTTAAGACCGTTATGACTCGTTGCATCCAGTGTACAAGGTGTGTGAGGTTTGCCTCAGAAATTGCCGGGGTTCAGGATCTTGGCATGTTAGGTCGTG GCAGTGGAGAAGAAATTGGAACTTATGTTGAAAAACTTATGACAAGTGAGCTATCTGGAAATGTGATAGATATCTGTCCTGTGGGAGCCCTTACGTCGAA ACCTTTTGCATTTAAAGCTCGAAATTGGGAGTTGAAAGGTACAGAGACCATTGATATCACTGATGCAGTTGGATCCAACATCCGGATTGATAGCAGAGGT CCAGAGGTCTTGCGCATCACTCCACGGTTGAATGAGGATATAAATGAAGAATGGATATCAGACAAAACTCGGTTTTGCTATGATGGTTTAAAGAGGCAGA GGCTAAATGATCCTATGATTCGCGGTGCAGATGGGCGCTTTAAGGCTGTGAGCTGGCATGACGTCTTAGCTGTGGTTGCTGAGATTGCTCATCAAGTTAA GCCAGAGGAAATGGTGGGCATTGCTGGTAAACTATCTGATGCTGAATCCATGATGGCTCTGAAAGATTTCTTAAACAAAATGGGGTCAAATAATGTGTGG TGTGAAGGAAATGGCCCTAGCCCAAATGCTGATCTACGATCTGGATATATTATGAACAGTGGCATTAGTGGTCTTGAGAATGCAGATGTTTTCCTCTTGG TTGGAACCCAGCCAAGGGTAGAAGCTGCCATGGTAAATGCCAGAATCCGCAAGACAGTTCGAGGAAGTAATGCTAAGGTTGCTTATGTTGGCCCTCCCAC TGATTTCAACTATGATTGTGAGCATCTAGGCACTGGTCCTGAAACTCTAACTGAAATCGCAGAGGGTCGTCACCCCTTTTGCTCGACACTTTCAAATGCC AAAAATCCAGCCATCATCGTTGGTGCTGGACTCTTTGAGAGATCGGACAAGGATGCAATTTTCTCTGCTGTAGAAGCCATAGCGAAAAATGGGAATGTTG TACGACCTGACTGGAATGGTTTCAATGTGTTGCTTCTCAATGCTGCCCAAGCTGCAGCCCTTGACCTTGGACTTGTGCCAGAATCGAGCCAAAGTATTGA GAGTGCCAAGTTTGTGTATCTGATGGGTGCTGATGATGTGGATTTGGAAAAGCTTCCAAATGATGCCTTTGTTGTATATCAGGGGCACCATGGGGACCGT GGTGTGTATCGTGCCAATGTAATTCTACCAGCATCAGCATTCAGTGAGAAGGAAGGGACATATGAAAACACAGAAGGGTGTACGCAACAGACTTTGCCTG CAGTTCCAACGGCTGGTGATGCCAGGGATGACTGGAAGATAATTCGTGCTCTTTCTGAGGTAGCGGGGGTGCGGTTGCCCTACGATACAGTTGGGGCCAT CCGATCCCGGATTAAGACAGTTGCGCCAAACCTCCTGAGCGTGGAAGAAAGAGAGCCAGCTACCTTTTGGGCTTCATTGAAGCCTGATGTCACTAAGAAG ATGAGTTCAACTCCTTTCGAAGCTGCTATAGACAATTTCTATATGACTGATTCTATTACCAGGGCATCAAAAATAATGGCTCAATGCAGTGCACTGCTGC TAAAGAAGTGA
AA sequence Show only first row Show all	>Potri.004G082800.1 pacid=42794125 polypeptide=Potri.004G082800.1.p locus=Potri.004G082800 ID=Potri.004G082800.1.v4.1 annot-version=v4.1 MGLGLLASRLIRPQKTAARNLLLRSIVTKPELQSAEPATTPQPDLPPRTPLGGARVHFPNPDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHS RLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPVAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEVKRSVVDKNLGP LVKTVMTRCIQCTRCVRFASEIAGVQDLGMLGRGSGEEIGTYVEKLMTSELSGNVIDICPVGALTSKPFAFKARNWELKGTETIDITDAVGSNIRIDSRG PEVLRITPRLNEDINEEWISDKTRFCYDGLKRQRLNDPMIRGADGRFKAVSWHDVLAVVAEIAHQVKPEEMVGIAGKLSDAESMMALKDFLNKMGSNNVW CEGNGPSPNADLRSGYIMNSGISGLENADVFLLVGTQPRVEAAMVNARIRKTVRGSNAKVAYVGPPTDFNYDCEHLGTGPETLTEIAEGRHPFCSTLSNA KNPAIIVGAGLFERSDKDAIFSAVEAIAKNGNVVRPDWNGFNVLLLNAAQAAALDLGLVPESSQSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDR GVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTAGDARDDWKIIRALSEVAGVRLPYDTVGAIRSRIKTVAPNLLSVEEREPATFWASLKPDVTKK MSSTPFEAAIDNFYMTDSITRASKIMAQCSALLLKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Potri.004G082800 [exp]	0	1
AT5G47030			ATPase, F1 complex, delta/epsi...		Potri.014G053000 [exp]	7.48	0.7706	Pt-PPFRU36.1
AT1G30580			GTP binding (.1)		Potri.011G164000 [exp]	14.28	0.7610
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Potri.019G082000 [exp]	64.18	0.6554	Pt-INV1.2
AT1G01910			P-loop containing nucleoside t...		Potri.002G152500 [exp]	73.00	0.6929
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Potri.010G191100 [exp]	91.91	0.6874	Pt-SYP31.1
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.001G067900 [exp]	92.39	0.6787
AT5G26360			TCP-1/cpn60 chaperonin family ...		Potri.004G133800 [exp]	105.36	0.6583
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G120800 [exp]	129.48	0.6557
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.008G009500 [exp]	134.23	0.6660
AT1G56450		PBG1	20S proteasome beta subunit G1...		Potri.018G037700 [exp]	136.60	0.6592	Pt-PBG1.1

Compare expression of checked genes

Potri.004G082800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.