Plant FIBer expression Database

Potri.004G082900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52640 836 / 0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007387
[exp]
884 / 0 AT3G52640 830 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Lus10020806
[exp]
789 / 0 AT3G52640 741 / 0.0 Zn-dependent exopeptidases superfamily protein (.1.2.3)
Lus10007388
[exp]
221 / 8e-68 AT3G52640 194 / 1e-58 Zn-dependent exopeptidases superfamily protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0035 Peptidase_MH PF04389 Peptidase_M28 Peptidase family M28
Representative CDS sequence
>Potri.004G082900.1 pacid=42796146 polypeptide=Potri.004G082900.1.p locus=Potri.004G082900 ID=Potri.004G082900.1.v4.1 annot-version=v4.1
ATGGCCACAGACCTTCCTTGTCTTCTTCCATTTCTTCTTTTTCTCTTCATTTCTCACTTTCCCCTCTCTTTCTCTGGTTCAGTAAATTCAATGGAGTCAG
TTCCTGATCTAACAAAGTCAATGTATGTGGATTTTGATGGATACCCTTGTGTTAGATTACTCAATCTTACCGGAGAAATTGGCTGTTCAAATCCCGGACG
AGATAAGGTGGTTGCTCCGGTTGTAAGATACAAGAATGTTAATGAAGTTAGTAAGCCTTCTGCAGTTTTGGTGTCCTTAGATGAGTTTCTTGAACTTATT
GGCAGAATATCAAATGATTCAAGTTTTGCCAAGAACATTGGTGGTGTTTTAGTTGAACAAGGGATGGACTCACAAATCAAATTAAAAGGATTTTCTCCAG
ACCAAAAGTTCCCAGGAGCTGAATATGCACCTTACAAAAGCATCAACTATGAATGGAACCCAATTGGATCTGGTATGATGTGGAAAGCTTACAGTTTTCC
TGTATTCTTACTCACTGAGGGTGGTGCACAGTTGGTGCAGGAGGTTGCCATGAACAATGAGAAGAAAAGGAATGATTATACCGCAGATGTGGTTGAGTTT
GATTCAGTGATGCAGACAACAAAATCTGGTACCCATGATTCAGAATCCTGTTTACAAGAACAGACTTGCTTTCCATTAGGTGGATACAGTGTTTGGTCGT
CGCTTCCTCCAATTAATAATTCATCCACAAATCACTCCAAGCCAATTATATTAACTGTCGCATCTATGGATTCTGCTTCATTTTTCCGTGATAAAAATTT
AGGTGCCGAATCCCCTATTTCTGGACTGATAGCATTGCTGGCAGCTGTTGATTCACTTTCTCATGTAAATGGTCTGGATGACCTTGGTAAACAGCTTGTC
TTTTCAGTTTTCACAGGGGAGGCATGGGGTTACCTTGGTAGCAGGAGATTTTTGTTTGAACTAGATTTACAATCAGAGGCTGTTAATGGGCTCAACAGTA
GTCTGATTGAAACGGTCATAGAAATTGGATCTGTTGGAAAGGGCTTCAGTCAAGGGAATAGCACATTTTTTGCTCACACAGCTGCGGTTTCACTGGCCAC
CAATGAAACATTGAATGCCTTAAAACATGCTCGAGATTCACTTGAAAACATTACAGTTTCATCAGCAAGCACTTTAAATCCAGGGATACCCCCATCATCC
TTGATGGCATTTCTTAAAAAGAACCCTTCAACTTCTGGGATGGTATTGGAAGATTTTGATACTTCTTTCTCTGATAAGTTTTACCACAGTCACTTGGATG
ATATGTCAAATATAAATTCTTCAGCCATAGTGGCAGCTGCTTCTCTTGTTGCCCGCACACTTTATATCCTTGCAAGTGATGACAAAAATTTAAGCAGCAC
AGCTCTTGATGCCATCAATGTCAATGCCTCTCTAGTTGAAGAACTGATGAGTTGCCTATTGGACTGTGAACCAGGATTGTCTTGTGAGTTGGTGAAAAGT
TATATAGTACCAACCAATCAATGCCCAAACCACTATGTTGGAGTTATCCTTGGGGAACCTTCGTCAAATCCCTATCTTGGATATGTTGATGATGTTTCCA
GGTTTATGTGGAATTTTCTAGCTGATAGAACTTCTAGTTCGATGGAGGATGCGAGCTCTGATTGTTCAAAAGAGTGCAGCAACAAAGGTGGTGTGTGCAT
TAAGGCAGAGGTAGATGGGAAGGGAGTCTGTGCTATTTCTACAACCAGGTATGTACCAGCGTATTCAACACGCTTGAACTATGAATCTGGAACTTGGCGT
GTGTTGCCTTCAGATTCTTCTGATCCCATGGGAATGGTGGATCCTGTCTGGACGGAGAGCAACTGGGACACAATCATGCTTCGGGTCTACACTGTGCAGG
ATGCAGCTTTTGATCGTTTAGTTTTGCTGGCAGGTATTACCATCACAGTCATGGCTTACCTTGCAATTGTGCTTACAAGAGCCTATATAGCGAAGGCCTT
GAAGCGGGATTGA
AA sequence
>Potri.004G082900.1 pacid=42796146 polypeptide=Potri.004G082900.1.p locus=Potri.004G082900 ID=Potri.004G082900.1.v4.1 annot-version=v4.1
MATDLPCLLPFLLFLFISHFPLSFSGSVNSMESVPDLTKSMYVDFDGYPCVRLLNLTGEIGCSNPGRDKVVAPVVRYKNVNEVSKPSAVLVSLDEFLELI
GRISNDSSFAKNIGGVLVEQGMDSQIKLKGFSPDQKFPGAEYAPYKSINYEWNPIGSGMMWKAYSFPVFLLTEGGAQLVQEVAMNNEKKRNDYTADVVEF
DSVMQTTKSGTHDSESCLQEQTCFPLGGYSVWSSLPPINNSSTNHSKPIILTVASMDSASFFRDKNLGAESPISGLIALLAAVDSLSHVNGLDDLGKQLV
FSVFTGEAWGYLGSRRFLFELDLQSEAVNGLNSSLIETVIEIGSVGKGFSQGNSTFFAHTAAVSLATNETLNALKHARDSLENITVSSASTLNPGIPPSS
LMAFLKKNPSTSGMVLEDFDTSFSDKFYHSHLDDMSNINSSAIVAAASLVARTLYILASDDKNLSSTALDAINVNASLVEELMSCLLDCEPGLSCELVKS
YIVPTNQCPNHYVGVILGEPSSNPYLGYVDDVSRFMWNFLADRTSSSMEDASSDCSKECSNKGGVCIKAEVDGKGVCAISTTRYVPAYSTRLNYESGTWR
VLPSDSSDPMGMVDPVWTESNWDTIMLRVYTVQDAAFDRLVLLAGITITVMAYLAIVLTRAYIAKALKRD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G52640 Zn-dependent exopeptidases sup... Potri.004G082900
[exp]
0 1
AT3G19180 ATCDP1, ARC6H, ... A. THALIANA CHLOROPLAST DIVISI... Potri.012G035900
[exp]
4.35 0.7139
AT1G66520 PDE194 pigment defective 194, formylt... Potri.017G123300
[exp]
18.33 0.6668
AT5G48385 FRIGIDA-like protein (.1) Potri.007G050800
[exp]
28.46 0.6333
AT5G04310 Pectin lyase-like superfamily ... Potri.010G229000
[exp]
36.67 0.6666
AT1G64390 ATGH9C2 glycosyl hydrolase 9C2 (.1) Potri.003G139600
[exp]
38.80 0.6596
AT2G20580 RPN1A, AtRPN1a 26S proteasome regulatory subu... Potri.007G137200
[exp]
60.76 0.6281
AT3G49250 IDN1, DMS3 INVOLVED IN DE NOVO 1, defecti... Potri.015G012600
[exp]
87.30 0.5846
AT3G14190 unknown protein Potri.009G072000
[exp]
106.29 0.5973
AT3G55990 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29... Potri.008G070000
[exp]
107.51 0.5824
AT3G04480 endoribonucleases (.1) Potri.019G019600
[exp]
134.45 0.5824

Potri.004G082900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.