Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37530 646 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G55130 51 / 1e-06 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 42 / 0.0006 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G355800 [exp] 49 / 6e-06 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Potri.015G096300 [exp] 46 / 5e-05 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002651 [exp] 668 / 0 AT5G37530 660 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10012735 [exp] 665 / 0 AT5G37530 661 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000697 [exp] 46 / 4e-05 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 46 / 4e-05 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00899 [poplar] [flax] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Potri.004G083200.1 pacid=42794832 polypeptide=Potri.004G083200.1.p locus=Potri.004G083200 ID=Potri.004G083200.1.v4.1 annot-version=v4.1 ATGGAGGAGCGACTGAAACACTTGACATTAGTTGGAGCCGGAGCTCTTTTGGGTTCTGTTTCTACTCTATTCCTTCTCAAGCTTCTTCCAAGAAGTATTA TAAAGGAATGCAGTAAAAGCGTTGGTGAATTGAATGCTGGTAAAGGAATTGTTTCGGAGATGTCGGTCAGAAGTGGTGTTGATGTAGATAGTAATTCTGG GATGCCTGATTCAGACCTTTTAGCAGATGAAATAGTATCTGAACAATTGACTAGGAACATTCAATTCTTTGGCTTTGAGGCTCAACAGAAGGTGACTACA TCCTATGTTGTTGTCATTGGTCTTGGAGGTGTTGGGAGTCATGCTGCATCGATGCTCTTGAGGTCTGGAGTTGGCAGGCTCCTCCTTGTGGACTTTGACC AGGTTTCTGTTTCATCCTTAAATCGCCATGCTGTCGCAACTCGAGCAGATGTTGGTATTCCAAAAGCCGAGTGCCTCAAGAAGCATTTCTCAACAATCTT CCCAGAGTGCCACATAGAAGCAAAAGTACTGCTGTATGATGCATCAACTGAAGAAAAAATTCTTTCTGGCCATCCCGACTTTGTTTTGGACTGCATTGAT AATATTGATACAAAGGTGGCACTTCTTGCTGCATGTGTGCGTAGGGGTTTAAAGGTTCTATCTGCAACTGGAGCAGGTGCTAGAGCTGATCCAACAAGAA TACGGGTGGCTGATTTAAGAGAGTCAACAAATGACCCTTTATCCCGAGCTGTGAGGTATCGTTTGAGGAAAGATCATGGCATTGAGGGTGGCATCCCTGT TGTGTTCTCTCTAGAAAAACCTAAAGCCAAGCTGCTTCCATTTAAGGGACCAAGTGGAGAAGAAGAAAATCCTTCTGACTATCAGGTAGTGCCTGGGTTT AGGGTTCGCATAATACCTGTTCTTGGTACCATCCCTGCTATATTTGGACAGGTCATGGCCTCCTATGTTGTGACACAGCTCACGGGATTGAATGTTCATC CTGAACCTATAGTAAATTTAGATTTGGATCATTATCGGGTGCTTCATCAGCGTCTTATTGAGCATGAGGAGTCATTGTTTGGCACTGCCGTGCAAGTCCA GGTGGATGTTGAGGAAGTGATGTATGTTGCCAAAGAACTGTGGCATGGACGAAGTGCTAGAGATCAGTTTGCAAAGGATGTTGGACGTGGAATGTGGCGA TCTGTAAATGAGTTAATGCTTGTGAGGTGGGACAAGGAGAAGCCAGCTTCTGTCTCAAACTTGATTCTCTTAAAATTTAAAGAGGCAGATGAACACGAGT TGAGGACGCTTGAAGAAATCAAGGAGTTGGAACCTGAATTTTATGAGAGGGTGGAATCTGCATTGAAACGAGCTCAATTGGACTTTGGTTTGTGA
AA sequence Show only first row Show all	>Potri.004G083200.1 pacid=42794832 polypeptide=Potri.004G083200.1.p locus=Potri.004G083200 ID=Potri.004G083200.1.v4.1 annot-version=v4.1 MEERLKHLTLVGAGALLGSVSTLFLLKLLPRSIIKECSKSVGELNAGKGIVSEMSVRSGVDVDSNSGMPDSDLLADEIVSEQLTRNIQFFGFEAQQKVTT SYVVVIGLGGVGSHAASMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGIPKAECLKKHFSTIFPECHIEAKVLLYDASTEEKILSGHPDFVLDCID NIDTKVALLAACVRRGLKVLSATGAGARADPTRIRVADLRESTNDPLSRAVRYRLRKDHGIEGGIPVVFSLEKPKAKLLPFKGPSGEEENPSDYQVVPGF RVRIIPVLGTIPAIFGQVMASYVVTQLTGLNVHPEPIVNLDLDHYRVLHQRLIEHEESLFGTAVQVQVDVEEVMYVAKELWHGRSARDQFAKDVGRGMWR SVNELMLVRWDKEKPASVSNLILLKFKEADEHELRTLEEIKELEPEFYERVESALKRAQLDFGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37530			NAD(P)-binding Rossmann-fold s...		Potri.004G083200 [exp]	0	1
AT3G59630			diphthamide synthesis DPH2 fam...		Potri.006G123700 [exp]	1.41	0.8389
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.016G045800 [exp]	6.48	0.8247
AT1G11710			Pentatricopeptide repeat (PPR)...		Potri.011G003700 [exp]	6.70	0.8110
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.001G048100 [exp]	10.48	0.7982
AT5G67640			unknown protein		Potri.007G006000 [exp]	10.95	0.7951
AT5G24680			Peptidase C78, ubiquitin fold ...		Potri.012G004300 [exp]	15.06	0.7074
AT1G79220			Mitochondrial transcription te...		Potri.007G069100 [exp]	19.18	0.8149
AT5G62270			unknown protein		Potri.007G133900 [exp]	19.33	0.7855
AT1G31660			unknown protein		Potri.001G394000 [exp]	19.33	0.7798
AT1G55800			Domain of unknown function (DU...		Potri.016G003066 [exp]	19.49	0.7558

Compare expression of checked genes

Potri.004G083200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.