Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SKOR.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02850 1268 / 0 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 1149 / 0 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT2G26650 400 / 2e-126 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G22200 369 / 6e-115 AKT3, AKT2/3 potassium transport 2/3 (.1) AT2G25600 361 / 3e-111 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 348 / 2e-106 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 298 / 5e-90 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 291 / 3e-87 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G32650 262 / 3e-77 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT2G03430 72 / 1e-13 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135400 [exp] 1552 / 0 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.012G043000 [exp] 1069 / 0 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.018G031600 [exp] 388 / 2e-121 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 385 / 3e-120 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G249900 [exp] 384 / 1e-119 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 377 / 1e-117 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 328 / 6e-100 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 290 / 3e-87 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 275 / 1e-81 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015687 [exp] 1298 / 0 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10001999 [exp] 993 / 0 AT3G02850 970 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10037694 [exp] 674 / 0 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10019944 [exp] 410 / 2e-130 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10015474 [exp] 394 / 5e-124 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1) Lus10019442 [exp] 382 / 3e-119 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 374 / 3e-116 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 372 / 3e-115 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10002529 [exp] 369 / 3e-114 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 358 / 3e-110 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF00520 [poplar] [flax] Ion_trans Ion transport protein CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.004G083300.2 pacid=42795806 polypeptide=Potri.004G083300.2.p locus=Potri.004G083300 ID=Potri.004G083300.2.v4.1 annot-version=v4.1 ATGGGTGGTCATGGTGATCATCATAGAGAGAGAAACAAGAAAGAATCCAATAATGATGATGATGAAGATGGAACGGAATACGAAGTGCAAGATTTGAGAG ACAGGATAAAATCATCAAGAGGGAGTCGATTTAATTTGTTAGAGAATGAGTTTGGACTCGTTAATAATACTGAGTCATCGTTGATTACAAATTTGAGAAG AAAACTGAGTCGTGAATCGGTTATTAATGGTATTCGTTACGTCTCCACAGGTCCCGCTATCCATCCTGATAACAGGTGGTATCGTGCATGGACAATATTT ATACTATTATGGGCAGTGTACTCTTCCTTCTTTACACCAATGGAGTTTGGTTTCTTCAGGGGATTGCCTGAGAATCTCTTCATAATGGACATAGTTGGAC AGGTTGCTTTTCTTCTTGATATCGTTTTACAATTCTTCGTTGCCTACAGAGACAGTCAGACTTATCGTATGATCTATAAGCGCTCTCCTATTGCTCTTCG GTACTTGAAATCTCATTTCATCATTGATTTACTTGGCTGCCTGCCTTGGGACATCATCTTCAAGGTTTGTGGACGTAGAGAAGAAGTGAGGTATCTTTTA TGGATTAGGCTGAGCAGGGTGCGGAAAGTAACTTCTTTTTTCCAAAAACTGGAGAAGGATATACGAATTAATTACCTTTTTACGAGGATTGTAAAGCTTA TAGTAGTAGAACTCTATTGCACACACACCGCAGCCTGCATCTTTTACTATTTGGCTACCACCTTGCCAGCTTCTCACGAAGGGTATACATGGATTGGAAG TTTGAAGATGGGTGGTTATAATTATACAAACTTCAGGGAGATCGATATTTGGATGCGGTACACAACATCTTTATATTTTGCCGTCGTCACTATGGCCACC GTTGGGTATGGAGATATACATGCTGTTAACTTGAGGGAAATGATATTTGTAATGATCTTTGTTTCCTTTGACATGATTCTCGGTGCATATTTGATCGGTA ATATGACAGCAATAACAGTAAAAGGTTCAAAGACAGAAAAGTTCAGGGATAAAATGACTGATCTCATCAAATATATGAATAGAAATAGACTTGGAAAGGA CATCCGTAATCAGATTAAAGGCCATTTGCGCTTACAGCATGAGAGTAGCTATACCGAGGCTTCTGCATTGCAGGATCTCCCCATCTCTATTCGTGCTAAG ATTTCCCAAACTTTGTACACAGAATATATCGAAAAGGTTCCCTTGGTTAAGGATTGCTCTGCCGAATTTATTAATCAAATTGTCATTAGGCTTCACGAGG AGTTCTTTCTCCCAGGAGAAGTAATTATGGAACAGGGGAACGTGGTAGATCAACTTTATTTTGTCTGTCATGGTGTGCTGGAAGAGGTTGGAATAGGGCA AGATGGATCAGAAGAAACTGTCAAACTTTTGCCTCCTAACAGTTCATTTGGAGAAATTTCTATTCTTTGCAACATTCCTCAGCCTTATACAGTTAGAGTT TGTGAGTTATGTCGGCTTTTACGGATTGATAAACAATCTTTATCAAATATACTGGAGATTTACTTTTATGATGGACGCAGAATTTTGGACAACCTTTTAG AGGGGAAAGAATCCAATCTTCAATATAAGCAGTTGGAATCAGATATTACATTTCATATCGGAAAGCAGGAAGCTGAACTTGCTTTGAGGGTGAATAGCAC AGCTTATCATGGAGATCTTTATCAGCTGAAGGGCTTGATCCGAGCAGGTGCTGATCCCAATAGAACAGATTATGATGGAAGATCACCCTTGCATCTTGCC GCATCTAGAGGTTACGAAGATACCACACTTTTCCTTATTCAAGAAGGAGTTGACATTAACATCAAAGATAAATTTGGAAACACACCATTGTTGGAAGCTA TCAAGAATGGACACGATCGAGTTGCATCTTTACTTTCTGAACAAGGGGCCATCTTGAACATAGATGATGCTGGTAGTGTTCTGTGTAGAGCTGTTGCAAG AGGGGATTCAGATTTTCTCAAAAGGGTTTTGTCCAATGGAATTGATCCAAACTCTAAAGACTACGATCACCGGACTCCACTTCATGTAGCTGCATCAGAA GGATTATATTTGATGGCAAAGCTGCTGATAGAAGCTGGTGCTAGTGTTTTCTCGAAGGACAGATGGGGTAACACTCCACTTGTTGAAGGCCGGATCTGTG GGAACAAGAATTTGATCAAGCTGTTAGAAGAAGCAAAATCTTCCCAGAAATTGGAATTTCATTATGCCTCCCATGAAACCACAGAAAAAATGCTCCCAAA GAAATGTACAATTTTCCCTTTCCACCCATGGGGTGCAAAAGAACAGAGAAGACCTGGAGTAGTACTATGGATCCCACACACCATGGAAGAGCTTGTAAAA GCAGCATCAGAGAAGCTACAGCTTCCAGATGGTTCTTGTATATTATCAGAAGATGCTGGTAAAATTCTTCAAGTAGACATGATCGATGATGGCCAGAAGT TGTATCTAACAAGTGATCAAACACATTAG
AA sequence Show only first row Show all	>Potri.004G083300.2 pacid=42795806 polypeptide=Potri.004G083300.2.p locus=Potri.004G083300 ID=Potri.004G083300.2.v4.1 annot-version=v4.1 MGGHGDHHRERNKKESNNDDDEDGTEYEVQDLRDRIKSSRGSRFNLLENEFGLVNNTESSLITNLRRKLSRESVINGIRYVSTGPAIHPDNRWYRAWTIF ILLWAVYSSFFTPMEFGFFRGLPENLFIMDIVGQVAFLLDIVLQFFVAYRDSQTYRMIYKRSPIALRYLKSHFIIDLLGCLPWDIIFKVCGRREEVRYLL WIRLSRVRKVTSFFQKLEKDIRINYLFTRIVKLIVVELYCTHTAACIFYYLATTLPASHEGYTWIGSLKMGGYNYTNFREIDIWMRYTTSLYFAVVTMAT VGYGDIHAVNLREMIFVMIFVSFDMILGAYLIGNMTAITVKGSKTEKFRDKMTDLIKYMNRNRLGKDIRNQIKGHLRLQHESSYTEASALQDLPISIRAK ISQTLYTEYIEKVPLVKDCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTVRV CELCRLLRIDKQSLSNILEIYFYDGRRILDNLLEGKESNLQYKQLESDITFHIGKQEAELALRVNSTAYHGDLYQLKGLIRAGADPNRTDYDGRSPLHLA ASRGYEDTTLFLIQEGVDINIKDKFGNTPLLEAIKNGHDRVASLLSEQGAILNIDDAGSVLCRAVARGDSDFLKRVLSNGIDPNSKDYDHRTPLHVAASE GLYLMAKLLIEAGASVFSKDRWGNTPLVEGRICGNKNLIKLLEEAKSSQKLEFHYASHETTEKMLPKKCTIFPFHPWGAKEQRRPGVVLWIPHTMEELVK AASEKLQLPDGSCILSEDAGKILQVDMIDDGQKLYLTSDQTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.004G083300 [exp]	0	1	Pt-SKOR.3
AT3G23160			Protein of unknown function (D...		Potri.008G164700 [exp]	3.46	0.8307
AT5G01950			Leucine-rich repeat protein ki...		Potri.016G140300 [exp]	4.79	0.8393
AT2G37730			Protein of unknown function (D...		Potri.006G089150 [exp]	10.48	0.8205
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.019G081500 [exp]	12.00	0.8096	MYB6.2,MYB168
AT1G58420			Uncharacterised conserved prot...		Potri.007G006100 [exp]	17.43	0.8106
AT1G72510			Protein of unknown function (D...		Potri.001G166900 [exp]	18.43	0.8092
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	20.29	0.8230
AT5G26600			Pyridoxal phosphate (PLP)-depe...		Potri.013G002400 [exp]	20.44	0.8083
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G072600 [exp]	23.81	0.8274
AT1G27320		AHK3	histidine kinase 3 (.1)		Potri.001G057400 [exp]	26.26	0.7873	PHK3,AHK3.1

Compare expression of checked genes

Potri.004G083300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.