Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14090 374 / 2e-125 UDP-Glycosyltransferase superfamily protein (.1) AT4G15550 365 / 2e-121 IAGLU indole-3-acetate beta-D-glucosyltransferase (.1) AT1G05560 354 / 2e-117 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G05530 353 / 2e-117 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT2G31750 278 / 3e-88 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G24100 278 / 6e-88 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT1G05680 274 / 1e-86 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT2G43820 269 / 9e-85 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05675 266 / 1e-83 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 265 / 8e-83 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101800 [exp] 647 / 0 AT4G14090 369 / 3e-124 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G146000 [exp] 459 / 9e-159 AT4G15550 429 / 2e-147 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.002G236500 [exp] 442 / 1e-151 AT4G15550 436 / 3e-150 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.002G236400 [exp] 441 / 1e-151 AT1G05560 442 / 1e-152 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Potri.016G052500 [exp] 433 / 2e-148 AT4G15550 419 / 3e-143 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.006G055600 [exp] 432 / 4e-148 AT4G15550 442 / 2e-152 indole-3-acetate beta-D-glucosyltransferase (.1) Potri.015G071900 [exp] 324 / 6e-106 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.017G032300 [exp] 306 / 7e-99 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G175000 [exp] 300 / 1e-96 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015515 [exp] 322 / 1e-104 AT4G15550 379 / 3e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10019989 [exp] 322 / 1e-104 AT4G15550 379 / 5e-127 indole-3-acetate beta-D-glucosyltransferase (.1) Lus10021610 [exp] 318 / 3e-103 AT1G05560 372 / 6e-125 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) Lus10008742 [exp] 294 / 4e-94 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10009412 [exp] 292 / 2e-93 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10010712 [exp] 292 / 3e-93 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10020556 [exp] 285 / 1e-90 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006353 [exp] 285 / 2e-90 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006352 [exp] 281 / 3e-89 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 276 / 4e-87 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.004G083700.2 pacid=42795831 polypeptide=Potri.004G083700.2.p locus=Potri.004G083700 ID=Potri.004G083700.2.v4.1 annot-version=v4.1 ATGGAGAACAAGCACTTCCTTCTGATAACCTGTCCTTTCCAAGGCCACTTAAATCCTATGCTCCAACTTGCCAAGAACCTAAGACAAGCTGGTGCAGCAA GGGTGACTTTTGCCACCACAGTACATGGCCTTACTCAGATAAAAACATTCCCATCTCTTGATGGCTTATACTTTGCCTCCTTCTCTGATGGATTTGATGA TGGAATCAAACATACCACCAATTCACAAGACATGCTTTCAGAACTCAAGCGTGCTGGCTCCCAAACTTTAACTGAACTCATCATGACCTTCTCCAAGAAT TGTCATCCTGTCAGCTTCCTAATCTACACTCTCATCCTCCCTTGGGCTGCTGATGTTGCACGGTACATGTCAATTCCCTCTGCTTTCCTCTATATTCAGT CTGCTACTTCACTAGCTCTCTGTCACCATTTCTTTAATCGACATGGTGGTGTATATGATCTTTACAACAGCAGTGAAAATAAACCTCCAAGTTCAATACA AGTACCTGGGTTGCCTCCATTTGAAACGGAAGACATCCCTTCTTTTCTCTTACCAAATGGTCCGCACTCATCACTAAATCCTGTTTTTCAACATCATATC CAAGTCCTAGAACAAGAACCAAGCCCATGGGTGCTCCTTAACAGTTTTGATTGCCTAGAAGAAGAAGTAATCGCAGCTATTGGTAATAGAAGTCTAATCC CAATAGGACCATTGATTCCATTTGCACTTTTAGACAAAAACCACCAATCAGACACATCCTGTGGGTGTGACTTATTTCAAAAATCTACAGAATACATTCA ATGGTTGAATTCAAAGCCAAAAACGTCAGTTATTTACATTTCATTTGGAAGTGTTGTTGTGTTGCAAAAAAATCAAATGGAAGAGATGTTGCTTGGTCTA ATTGGTACTTGCAGGCCATTTTTGTGGATAATCCGATCTTCAGATAATAAAGACACAGAATTTGAAGAGATGGTAAGGGAAAAAGTGAACAAAGAAAAGG GGTTGATAGTTCCATGGTGTTCACAGATGGAGGTCCTTGCTCATGAATCAATAGGGTGTTATATGATGCACTGCGGATGGAACTCAACAATGGAGAGCCT GGTGGCTGGCATTCCTGTTGTGGGATTACCACAGTTTGCTGATCAGACAATAAATGCAAAAATGATAGAAGAGGTGTGGGGGAATGGGGTTAGAGCAAGA GTGAATGAAGTTGGTATTGTGGAAGCAGAAGAGATTAGGAGATGTCTAGAGGTGGTAATTGGAAGTGGGGAGAAAGGACAGGAAATAAGGAGCAATGCTA AGAAGTGGAGTGGATTGGCTTTGGATGCTGTGAAGGACGGAGGTTCTTCACACAACAATCTCAAAGCTTTCCTAGAAAATGTTACAACTTCAGCAAAGAT GATAAATGGTGTATTTGACGGAGGCGCTGAAAATAAGACAAAAGATGCAACTAAACCAAATGAGAACTCGAAAAACTCAAGTCATTTTTCCAGTAGAGAA TCTGCAAGAGACATTCAAATTCAGCAGGTCTTAAACTGA
AA sequence Show only first row Show all	>Potri.004G083700.2 pacid=42795831 polypeptide=Potri.004G083700.2.p locus=Potri.004G083700 ID=Potri.004G083700.2.v4.1 annot-version=v4.1 MENKHFLLITCPFQGHLNPMLQLAKNLRQAGAARVTFATTVHGLTQIKTFPSLDGLYFASFSDGFDDGIKHTTNSQDMLSELKRAGSQTLTELIMTFSKN CHPVSFLIYTLILPWAADVARYMSIPSAFLYIQSATSLALCHHFFNRHGGVYDLYNSSENKPPSSIQVPGLPPFETEDIPSFLLPNGPHSSLNPVFQHHI QVLEQEPSPWVLLNSFDCLEEEVIAAIGNRSLIPIGPLIPFALLDKNHQSDTSCGCDLFQKSTEYIQWLNSKPKTSVIYISFGSVVVLQKNQMEEMLLGL IGTCRPFLWIIRSSDNKDTEFEEMVREKVNKEKGLIVPWCSQMEVLAHESIGCYMMHCGWNSTMESLVAGIPVVGLPQFADQTINAKMIEEVWGNGVRAR VNEVGIVEAEEIRRCLEVVIGSGEKGQEIRSNAKKWSGLALDAVKDGGSSHNNLKAFLENVTTSAKMINGVFDGGAENKTKDATKPNENSKNSSHFSSRE SARDIQIQQVLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14090			UDP-Glycosyltransferase superf...		Potri.004G083700 [exp]	0	1
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072000 [exp]	1.73	0.9423	Pt-CYP704.1
AT1G48210			Protein kinase superfamily pro...		Potri.010G001500 [exp]	2.00	0.9494
AT1G78140			S-adenosyl-L-methionine-depend...		Potri.002G095100 [exp]	4.00	0.9250
AT2G36430			Plant protein of unknown funct...		Potri.005G116100 [exp]	4.89	0.9189
AT2G47390			Prolyl oligopeptidase family p...		Potri.014G120600 [exp]	7.61	0.9056
AT5G03560			Tetratricopeptide repeat (TPR)...		Potri.016G096900 [exp]	12.64	0.9239
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Potri.017G078100 [exp]	14.83	0.9108
AT4G01720	WRKY	ATWRKY47, WRKY4...	WRKY family transcription fact...		Potri.014G111900 [exp]	15.58	0.9082
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Potri.007G096400 [exp]	17.49	0.8999
AT1G06540			unknown protein		Potri.005G201300 [exp]	17.88	0.9144

Compare expression of checked genes

Potri.004G083700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.