Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37490 354 / 6e-119 ARM repeat superfamily protein (.1) AT1G66160 353 / 2e-118 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G02840 244 / 6e-77 ARM repeat superfamily protein (.1) AT3G52450 182 / 2e-52 PUB22 plant U-box 22 (.1) AT2G35930 181 / 4e-52 PUB23 plant U-box 23 (.1) AT3G19380 166 / 1e-46 PUB25 plant U-box 25 (.1) AT1G49780 162 / 3e-45 PUB26 plant U-box 26 (.1) AT3G11840 134 / 1e-34 PUB24 plant U-box 24 (.1) AT5G09800 120 / 7e-30 ARM repeat superfamily protein (.1) AT5G64660 112 / 8e-27 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G135000 [exp] 711 / 0 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.012G042600 [exp] 461 / 1e-160 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.015G031000 [exp] 457 / 4e-159 AT5G37490 323 / 9e-107 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 438 / 7e-152 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 414 / 3e-142 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.006G202600 [exp] 191 / 6e-56 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.016G069400 [exp] 187 / 2e-54 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 183 / 5e-53 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.004G140100 [exp] 174 / 1e-49 AT1G49780 517 / 0.0 plant U-box 26 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001079 [exp] 314 / 6e-103 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10040124 [exp] 181 / 2e-54 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10021267 [exp] 185 / 1e-53 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10013584 [exp] 181 / 4e-52 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10016166 [exp] 177 / 2e-50 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 170 / 7e-48 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10040125 [exp] 136 / 5e-37 AT3G02840 164 / 1e-48 ARM repeat superfamily protein (.1) Lus10005810 [exp] 139 / 1e-36 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10000800 [exp] 115 / 5e-28 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10004191 [exp] 115 / 3e-27 AT3G11840 300 / 2e-95 plant U-box 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.004G083900.1 pacid=42795001 polypeptide=Potri.004G083900.1.p locus=Potri.004G083900 ID=Potri.004G083900.1.v4.1 annot-version=v4.1 ATGATTGTTTCTTGGAGATTAAGGAGAAAGTCCAAGAAAAACAAGAATCCAAGCCAAGAAATCAATTCGGACATGGAAATCATGATTCCTAGACACTTCT GTTGCCCGATTTCTCTTGACTTGATGAAAGATCCGGTCACATTATCGACAGGAATCACATACGATAGAGAAAGTATCGAAAAATGGATCGAAGATGGCAA CCTAACATGTCCGGTTACAAACCAGGTGTTAGCCAGCTTTGATCAGATTCCGAATCATTCCCTGCGCAAGATGATTCAAGATTGGGGTGTTGAGAATCGT TCTTATGGGTTTGAAAGGATTCCTACGCCTCGTGTCCCTGTGACATCGTACGAGGTTTCGGAGATTTGTAGGAGGGTTAATTTTGCAACTCAACGAGGCG AGCAAAAGAAGTGTCAAGAGCTGGTTAGGAAGATCAAGAATTGGGGTAAAGAGAGTGAGCGCAACAAGAGATGCGTTGTGGAGAATGGGGCTGGTTGTGT TTTATCGGCTTGCTTCGAGTCCTTTGCAAGTGTTGCAATGGAGAAAGATGAGGATTTGTTGGGAGAGATTTTATCAGCTTTGGTATGGATGTTTCCACTT GGTGAAGGCGGCCAAAGTAGGCTTGGATCCATCGTGTCTTTGAATTGTTTGGTATGGTTCTTGAAGAGGGGAGATCTTTCAGCCAGGCAAAATGCAGCTT TGGTGCTTAAAAATCTTCTTGCTCTAGATCAAAGGCATGTAAATGCCCTGGTGAAGATTGAAGGAGTGGTTGAAGCTTTGGTTAAGTTAATCAAGGAGCC TATTTGCCCAACAGCCACCAAAGCTTCATTGATGGCAATTTTCTACATGACTTCACCATCAAGTCTCAATGAGAAGATGATACCAACATTTGTGGAAATG GGTTTGGTTTCATTGATCATAGAGATTCTAGTTGATGGAGATAAAAGCATATGCGAGAAGGCACTAGGTGTTTTGGACCATATTTGTGATTGCAAAGAAG GGAGAGAAAAGGCCTATGAGAATGCTCTCATTGTAGCTGTTTTGATCAAGAAAATCTTGAATGTATCAGATTTGGCATCAGAATTGTCAGTTTCCATTCT CTGGAAGCTTTTCAAGAATTACGGAGAGAGATCAGAGGATGGCGATGATGATGCAGAAGGAGGTGTTGTAGTTGAAGCACTTCAAGTGGGTGCTTTCCAG AAGTTGTTGGTCTTATTGCAAGTGGGCTGTGGTTATAGCACAAAGAAGAAGCTTAAAGAGTTGCTAAAATTGTTGAATCTTTGTAGAGTTAAGTTAGATT GTTTTGATTCTTCAGCAGATTTCAAGTATGTCAAAAGGTCATACTGA
AA sequence Show only first row Show all	>Potri.004G083900.1 pacid=42795001 polypeptide=Potri.004G083900.1.p locus=Potri.004G083900 ID=Potri.004G083900.1.v4.1 annot-version=v4.1 MIVSWRLRRKSKKNKNPSQEINSDMEIMIPRHFCCPISLDLMKDPVTLSTGITYDRESIEKWIEDGNLTCPVTNQVLASFDQIPNHSLRKMIQDWGVENR SYGFERIPTPRVPVTSYEVSEICRRVNFATQRGEQKKCQELVRKIKNWGKESERNKRCVVENGAGCVLSACFESFASVAMEKDEDLLGEILSALVWMFPL GEGGQSRLGSIVSLNCLVWFLKRGDLSARQNAALVLKNLLALDQRHVNALVKIEGVVEALVKLIKEPICPTATKASLMAIFYMTSPSSLNEKMIPTFVEM GLVSLIIEILVDGDKSICEKALGVLDHICDCKEGREKAYENALIVAVLIKKILNVSDLASELSVSILWKLFKNYGERSEDGDDDAEGGVVVEALQVGAFQ KLLVLLQVGCGYSTKKKLKELLKLLNLCRVKLDCFDSSADFKYVKRSY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37490			ARM repeat superfamily protein...		Potri.004G083900 [exp]	0	1
AT2G33580			Protein kinase superfamily pro...		Potri.005G128401 [exp]	4.24	0.7653
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.002G016100 [exp]	5.00	0.7749
AT2G38250	Trihelix		Homeodomain-like superfamily p...		Potri.003G104500 [exp]	5.19	0.7840
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Potri.013G101100 [exp]	9.16	0.7915
AT3G09280			unknown protein		Potri.006G092200 [exp]	12.48	0.6820
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Potri.009G141400 [exp]	15.23	0.7617
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Potri.009G138400 [exp]	22.31	0.6779
AT2G01300			unknown protein		Potri.008G127800 [exp]	22.44	0.6888
AT5G24430			Calcium-dependent protein kina...		Potri.012G023300 [exp]	23.49	0.7830	CRK4
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.017G050600 [exp]	28.61	0.7601

Compare expression of checked genes

Potri.004G083900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.