Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66150 730 / 0 TMK1 transmembrane kinase 1 (.1) AT2G01820 660 / 0 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 537 / 3e-177 Leucine-rich repeat protein kinase family protein (.1) AT3G23750 533 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) AT1G52290 249 / 5e-73 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G10620 253 / 3e-72 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G70460 252 / 5e-72 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G68690 251 / 2e-71 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT4G02010 251 / 2e-71 Protein kinase superfamily protein (.1) AT1G23540 251 / 2e-71 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134900 [exp] 1550 / 0 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.010G103000 [exp] 689 / 0 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G137801 [exp] 681 / 0 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.018G141000 [exp] 553 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G203500 [exp] 551 / 0 AT2G01820 528 / 5e-173 Leucine-rich repeat protein kinase family protein (.1) Potri.016G070500 [exp] 548 / 0 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.006G073900 [exp] 546 / 6e-180 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G035900 [exp] 517 / 1e-168 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G217700 [exp] 517 / 2e-168 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031944 [exp] 942 / 0 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10039038 [exp] 784 / 0 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 780 / 0 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 679 / 0 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10010472 [exp] 657 / 0 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10034432 [exp] 589 / 0 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 586 / 0 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 530 / 1e-173 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 528 / 4e-173 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10023220 [exp] 439 / 8e-139 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G084000.1 pacid=42796411 polypeptide=Potri.004G084000.1.p locus=Potri.004G084000 ID=Potri.004G084000.1.v4.1 annot-version=v4.1 ATGAAGAGAAAAAGCAGTCAAAGTTTGAAGCTTTTTCTGATTTTCCTTGTTGGGTTTTCTTCAATCTTTCGTTATGCAAGCTCTCAAGCAAGCCCGGATG CTGAAGTTATGCTATCTCTCAAAAAAAGTCTCAATGTACCAGATTCACTTGGATGGTCGGACCCGGATCCATGCAAATGGAACCATGTAGGTTGTTCGGA TGAAAAACGGGTCACCCGGATCCAAATTGGACGCCAAAATCTTCAAGGTACACTCCCTTCAAATCTTCAAAACCTTACTCAACTTGAACGTTTAGAGCTT CAGTATAACAACATTTCGGGTCATTTGCCAAGTTTAAACGGGTTAAGTTCATTACAAGTGATCCTCTTAAGTGACAATAAGTTCACTTCAGTCCCTAGTG ACTTCTTCGCCGGTTTGTCTTCACTTCAATCAGTGGAGATTGATAACAACCCGTTTTCCAATTGGGTCATTCCAGAAAGTATACAAAATGCTTCTGGTTT GCAAAATTTTTCTGCAAATTCAGCTAATATATCCGGGTCAATACCGAGTTTTTTTGGCCCAGATGCTTTTCCGGCTCTAACCATTTTGAGGTTAGCTTTT AATGATCTTGAAGGTGAATTGCCTGCAAGTTTTTCAGGGTTGCAAGTTCAGTCTTTGTGGCTTAATGGACAGAAACTTAGTGGTAGCATTTATGTTATTC AGAACATGACTTTGTTAAGAGAAGTTTGGTTGCAGTCTAATGGATTTTCGGGTCCTTTACCTGACTTCTCGGGTTTGAAAGACTTAGAGAGCTTGAATTT AAGAGATAATTCATTTACTGGTCCCGTTCCTGAGTCTTTGGTTAATCTTGAGTCTTTAAAGGTTGTGAATTTGTCAAATAATTTGCTTCAAGGACCAATG CCTGTGTTTAAGAGCTCCGTTTCTGTGGATGTTGTTAAGGATTCTAACAGATTCTGTTTGTCAACTCCTGGTCCATGTGATTCGCGAGTTAATACCTTGC TTTCGATAGTGAAATCAATGTATTACCCACACAGGTTGGCAGATGGTTGGAAGGGGAATGATCCATGTGCAGATTGGTTTGGAATAACATGTAATAAGGG GAACATCACTGTTGTTAACTTTGAGAAGATGGGGCTAACAGGCTCGATTTCTCCAGATTTTGCATCACTTAAGTCATTGGAAAGGTTGGTTCTTGCAAAT AATAATCTGACAGGTTTGATTCCGCAAGAGATTACTACCTTACCTAGACTTAAGGCACTTGATGTGTCAAACAATCAGATTTATGGGAAAGTTCCGGCCT TTACGAACAATGTGATCGTTAATACTAATGGTAATCCACGTATAGGGAAGGATGTGAATAGTTCTACATCTCCAGGATCCCCATCTGCAAGTCCATCGGC AAATACTGGTTCTGGAAGTGGTGGCAATTCAGGAAAAAGTGGCAAGAAATCTTCCGCTTTCATCGGAGTCATTGTGTTTTCTGTGGTTGGGGGTGTTTTC TTATTGTTCTTGATCGGCTTGGTGGTTTTCTGTCTGTACAAGAAGAAACAAAAGCGGTTTAGCAGAGTACAGAGTCCGAATGAAATGGTGATTCATCCTC GCCACTCGGTGTCTGATAATGAGAGTGTGAAGATTACTGTTGCTGGATCAAGTGTTAGTGTTGGTGCTATTAGTGAAACACATACAATTCCTACAAGTGA ACAGGGTGACATTCAAATGGGTGAAGCTGGGAACATGGTCATTTCTATTCAAGTTTTAAGGAATGTTACTAACAATTTCAGTGAAGAAAACATATTGGGA CAAGGAGGTTTTGGAGTGGTCTACAAAGGTGAGTTGCATGATGGTACAAAGATTGCTGTGAAGAGGATGGGGTCTGGGGTCATAAGTAGTAAGGGGCTAA ATGAATTCAAGTCTGAGATTGCTGTTTTGACTAAGGTTAGGCACCGGCATCTTGTTGCTCTTCTTGGGTACTGCTTGGATGGTAATGAGAAGCTTCTTGT GTATGAGTATATGCCACAAGGGACACTCAGTAGACATCTCTTCAACTGGGCAGAAGAAGGATTGAAACCAATGGAGTGGACAAGAAGGTTGACAATAGCC TTGGATGTAGCTAGAGGTGTCGAGTATCTTCATGGTTTGGCTCATCAAAGCTTTATACACAGGGACTTAAAGCCTTCAAACATTCTTCTCGGGGATGATA TGAGGGCTAAGGTTTCAGATTTTGGCCTTGTGCGCCTTGCACCAGAGGGTAAAGGCTCTATTGAAACTAGAATTGCTGGAACTTTTGGATATTTGGCACC AGAATATGCAGTTACTGGTCGAGTGACAACTAAAGTTGATGTTTTCAGTTTTGGAGTGATATTGATGGAACTTATAACTGGTAGAAAAGCTCTGGATGAT AGCCAGCCTGAAGAGAGCATGCATCTTGTAACGTGGTTCCGCAGAATGCACCTGAACAAGGACACATTCCGGAAGGCCATCGATCCCACAATTGACCTCA ATGAGGAAACACTTGCCAGCATCAGCACCGTAGCAGAGTTGGCAGGTCACTGCTGTGCTAGGGAACCATATCAAAGGCCAGACATGGGTCATGCTGTGAA TGTTCTCTCTTCTCTGGTGGAGCTCTGGAAACCAACCGACCACAGTTCTGAAGACATATATGGTATTGACCTTGAAATGTCCTTGCCGCAGGCACTTAAG AAGTGGCAAGCTTATGAAGGTAGAAGCAACATGGAATCTTCTTCTTCTTCACTCCTTCCCAGCTTAGACAATACTCAGACCAGCATACCTGCGCGCCCAT ATGGGTTTGCTGAGTCATTTACATCAGCTGATGGAAGATGA
AA sequence Show only first row Show all	>Potri.004G084000.1 pacid=42796411 polypeptide=Potri.004G084000.1.p locus=Potri.004G084000 ID=Potri.004G084000.1.v4.1 annot-version=v4.1 MKRKSSQSLKLFLIFLVGFSSIFRYASSQASPDAEVMLSLKKSLNVPDSLGWSDPDPCKWNHVGCSDEKRVTRIQIGRQNLQGTLPSNLQNLTQLERLEL QYNNISGHLPSLNGLSSLQVILLSDNKFTSVPSDFFAGLSSLQSVEIDNNPFSNWVIPESIQNASGLQNFSANSANISGSIPSFFGPDAFPALTILRLAF NDLEGELPASFSGLQVQSLWLNGQKLSGSIYVIQNMTLLREVWLQSNGFSGPLPDFSGLKDLESLNLRDNSFTGPVPESLVNLESLKVVNLSNNLLQGPM PVFKSSVSVDVVKDSNRFCLSTPGPCDSRVNTLLSIVKSMYYPHRLADGWKGNDPCADWFGITCNKGNITVVNFEKMGLTGSISPDFASLKSLERLVLAN NNLTGLIPQEITTLPRLKALDVSNNQIYGKVPAFTNNVIVNTNGNPRIGKDVNSSTSPGSPSASPSANTGSGSGGNSGKSGKKSSAFIGVIVFSVVGGVF LLFLIGLVVFCLYKKKQKRFSRVQSPNEMVIHPRHSVSDNESVKITVAGSSVSVGAISETHTIPTSEQGDIQMGEAGNMVISIQVLRNVTNNFSEENILG QGGFGVVYKGELHDGTKIAVKRMGSGVISSKGLNEFKSEIAVLTKVRHRHLVALLGYCLDGNEKLLVYEYMPQGTLSRHLFNWAEEGLKPMEWTRRLTIA LDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKGSIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDD SQPEESMHLVTWFRRMHLNKDTFRKAIDPTIDLNEETLASISTVAELAGHCCAREPYQRPDMGHAVNVLSSLVELWKPTDHSSEDIYGIDLEMSLPQALK KWQAYEGRSNMESSSSSLLPSLDNTQTSIPARPYGFAESFTSADGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	0	1
AT4G23820			Pectin lyase-like superfamily ...		Potri.003G139100 [exp]	2.00	0.8948
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	2.00	0.8530	FAH1.2
AT1G63850			BTB/POZ domain-containing prot...		Potri.001G100900 [exp]	3.46	0.8611
AT2G23690			unknown protein		Potri.005G130200 [exp]	6.16	0.7735
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	6.16	0.8634
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	6.48	0.8027
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	7.41	0.8136
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	9.16	0.8098
AT1G58120			unknown protein		Potri.017G047700 [exp]	9.59	0.7297
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.006G270900 [exp]	9.94	0.8288	Pt-ATCSLC05.4

Compare expression of checked genes

Potri.004G084000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.