Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66140 165 / 4e-50 C2H2ZnF ZFP4 zinc finger protein 4 (.1) AT1G24625 125 / 3e-35 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G80730 105 / 3e-27 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) AT5G25160 94 / 6e-23 C2H2ZnF ZFP3 zinc finger protein 3 (.1) AT5G10970 94 / 9e-23 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G57520 75 / 1e-16 C2H2ZnF ATZFP2, ZFP2 zinc finger protein 2 (.1) AT5G14010 65 / 9e-13 C2H2ZnF KNUCKLES, KNU KNUCKLES, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G01860 66 / 1e-12 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G58070 62 / 3e-11 C2H2ZnF GIS GLABROUS INFLORESCENCE STEMS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G67030 58 / 4e-10 C2H2ZnF ZFP6 zinc finger protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134800 [exp] 448 / 1e-161 AT1G66140 165 / 3e-50 zinc finger protein 4 (.1) Potri.008G138000 [exp] 256 / 7e-86 AT1G66140 155 / 2e-46 zinc finger protein 4 (.1) Potri.010G102700 [exp] 245 / 9e-82 AT1G66140 157 / 4e-47 zinc finger protein 4 (.1) Potri.003G180600 [exp] 111 / 3e-29 AT5G10970 144 / 1e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.001G047500 [exp] 111 / 4e-29 AT5G10970 143 / 5e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G093300 [exp] 102 / 1e-26 AT1G24625 89 / 6e-22 zinc finger protein 7 (.1) Potri.001G298700 [exp] 101 / 3e-26 AT1G24625 86 / 1e-20 zinc finger protein 7 (.1) Potri.018G021400 [exp] 99 / 1e-24 AT5G10970 165 / 8e-50 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G261700 [exp] 99 / 1e-24 AT5G10970 166 / 4e-50 C2H2 and C2HC zinc fingers superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030764 [exp] 166 / 1e-49 AT1G66140 124 / 1e-33 zinc finger protein 4 (.1) Lus10013243 [exp] 165 / 2e-49 AT1G66140 125 / 3e-34 zinc finger protein 4 (.1) Lus10028997 [exp] 104 / 2e-27 AT1G24625 103 / 1e-27 zinc finger protein 7 (.1) Lus10003681 [exp] 104 / 5e-27 AT1G24625 112 / 9e-31 zinc finger protein 7 (.1) Lus10010388 [exp] 96 / 1e-23 AT1G24625 88 / 4e-21 zinc finger protein 7 (.1) Lus10014350 [exp] 93 / 2e-22 AT1G80730 110 / 1e-29 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1) Lus10026597 [exp] 91 / 2e-22 AT1G66140 85 / 1e-20 zinc finger protein 4 (.1) Lus10025471 [exp] 75 / 1e-16 AT5G57520 92 / 3e-24 zinc finger protein 2 (.1) Lus10018328 [exp] 75 / 3e-16 AT5G10970 94 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10006960 [exp] 74 / 4e-16 AT5G57520 92 / 2e-24 zinc finger protein 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G084100.2 pacid=42795394 polypeptide=Potri.004G084100.2.p locus=Potri.004G084100 ID=Potri.004G084100.2.v4.1 annot-version=v4.1 ATGAAACCAATTATTGATCTTGAAGTTGAAGCCACCTCAGAAAATGTTTCTGAAGTTAGCAGCCAAGTAGCTTCCAACTTATCAAACCAAGAAACTTCTG CAGCCCCCTCCAATGACAGCCTCACTAACTATTCCTATCTCACAAATGCCATAGCAACTCAATCTGGTTCGGAAATGGTTTCCCTTGACTTAACCCTTTG CTTCAATAATGATGAGTTAGGTGGAAGGGACCCAGTGGGACTCTCATTGTCAAGCACAAGTGAGAGTAGCAATGAACCTGCATCACGTACTACAGCTGAA GCAATACCACGAGTATTTTCTTGCAATTACTGTCAGCGCAAATTCTTCAGCTCTCAGGCACTTGGTGGACACCAAAACGCTCATAAGAGAGAGAGAACAT TAGCTAAGCGTGCAATAAGAATGGGTATTTTCTCGGAAAGGTATGCCAGCCTAGCATCGTTGCCTCTACATGGATCCTCATTCCGATCCCTAGGGATAGA GGCACATTCTTCAGTGCACCAAAACTTTGCACCACCAGTAAGGTCACTAGAAATAAGCAGCAGTGCAAGATTTGATCAAGGTTATGCAGGTCTGCCAGTA TTCATGGAGGATGATGAGGCAGAGTTGTTATGGCCAGGTAGTTTTCGACAGGTAGCTGTGTCAGACGATGCTCATCAAAGTTTTGTAGTCGCAGGAAGTT CAAACATGATTTTTTTGGGGGCAACTCCACCAGTGAACTTAGATGATTCTGCGCCAGATCTCACACTAAAACTTTGA
AA sequence Show only first row Show all	>Potri.004G084100.2 pacid=42795394 polypeptide=Potri.004G084100.2.p locus=Potri.004G084100 ID=Potri.004G084100.2.v4.1 annot-version=v4.1 MKPIIDLEVEATSENVSEVSSQVASNLSNQETSAAPSNDSLTNYSYLTNAIATQSGSEMVSLDLTLCFNNDELGGRDPVGLSLSSTSESSNEPASRTTAE AIPRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAIRMGIFSERYASLASLPLHGSSFRSLGIEAHSSVHQNFAPPVRSLEISSSARFDQGYAGLPV FMEDDEAELLWPGSFRQVAVSDDAHQSFVVAGSSNMIFLGATPPVNLDDSAPDLTLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.004G084100 [exp]	0	1
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Potri.002G111700 [exp]	14.28	0.7423
AT4G29190	C3HZnF	AtOZF2	Arabidopsis thaliana oxidation...		Potri.006G234300 [exp]	23.23	0.7286
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.003G188700 [exp]	30.82	0.7270	SDG906,SUVH3.3
AT4G32295			unknown protein		Potri.006G254700 [exp]	37.46	0.6759
AT5G49560			Putative methyltransferase fam...		Potri.007G025600 [exp]	44.59	0.7100
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.001G249900 [exp]	53.19	0.7112
AT5G09850			Transcription elongation facto...		Potri.001G307600 [exp]	56.56	0.6581
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.005G255200 [exp]	65.29	0.6871
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Potri.004G236500 [exp]	75.25	0.6913
AT4G24020		NLP7	NIN like protein 7 (.1)		Potri.003G143000 [exp]	80.62	0.6685

Compare expression of checked genes

Potri.004G084100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.