Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26560 368 / 3e-127 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) AT4G37070 315 / 1e-106 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37060 303 / 1e-101 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT4G37050 296 / 8e-99 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT5G43590 269 / 1e-88 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT3G54950 101 / 3e-24 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT2G39220 100 / 6e-24 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G63200 93 / 1e-21 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT4G29800 94 / 2e-21 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G134200 [exp] 462 / 2e-164 AT2G26560 524 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033400 [exp] 460 / 2e-163 AT2G26560 530 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033900 [exp] 459 / 3e-163 AT2G26560 536 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033500 [exp] 456 / 3e-162 AT2G26560 495 / 1e-175 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033600 [exp] 457 / 4e-162 AT2G26560 535 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.014G033200 [exp] 456 / 4e-162 AT2G26560 533 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134001 [exp] 451 / 3e-160 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G134051 [exp] 451 / 3e-160 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.017G133951 [exp] 451 / 3e-160 AT2G26560 525 / 0.0 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009340 [exp] 310 / 1e-104 AT4G37070 489 / 7e-173 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10000279 [exp] 304 / 2e-101 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10019637 [exp] 304 / 2e-101 AT4G37070 486 / 1e-170 phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) Lus10028347 [exp] 109 / 4e-27 AT2G11520 435 / 3e-149 calmodulin-binding receptor-like cytoplasmic kinase 3 (.1) Lus10036526 [exp] 105 / 1e-25 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 105 / 1e-25 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10040394 [exp] 105 / 1e-25 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 100 / 8e-24 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 86 / 6e-19 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 60 / 3e-10 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [poplar] [flax] Patatin PF01734 [poplar] [flax] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Potri.004G084233.1 pacid=42795575 polypeptide=Potri.004G084233.1.p locus=Potri.004G084233 ID=Potri.004G084233.1.v4.1 annot-version=v4.1 ATGGAAACTCCAAGATCACTCATTCAACCTCCAACTTATGGAAGCCAAATCACTATTCTTAGCATTGATGGAGGTGGAATAAGAGGCATTATTCCAGGAA CCATCCTTTTCTTTTTGGAGTCTGAGCTTCAGAAGCTGGATGGCGCAGATGCAAGACTTGCAGACTACTTTGATGTGATTTCAGGGACAAGCACTGGTGG ACTCTTGACTGCTATGCTAGCTGCCCCAAACAAGCAAAACCGCCCTTTGTTTGCTGCCAAAGACATTAATGCCTTCTACCTTGAGAACAGCCCTAAAATC TTTCCTCAAGACGGATCTCCATTTGCCTCAGCTGAAAATCTGATCAAGACTTTGAAAGGACCAAAATATGATGGGAAATTTTTACATAGCATTGTCAAGG AAAAGTTGGGAGACACACGGTTGCACCAGACCTTGACAAATATTGTGATCCCTACTTTTGATATCAAGAACCTCCAGCCAACAATCTTTTCTAGCTATCG GGTGAAGAACAACCCATCCACGGATGCCCTTTTATCTGATATATGCATTGGAACTTCAGCCGCCCCAACTTATCTCCCTGCTTATTATTTCCAAACCAAA GATCCATCAGGCAATGTTAGAGAATTCAATCTTATTGATGGTGGTGTGGCTGCAAATAATCCAACTTTAGTTGCCATAAGTGAAGTTTCAAAAGAAATCA ATCGGTATAATCCTGACTTCTTCCCCATAAAACCAATGGAATATGACCGATTTCTAGTCCTGTCTTTGGGAACTGGTACAGCAAAATCAGAAGGAAAGTA TGATGCAGATGAAGCAGCTAGGGTATCTTGGGATGGTTGA
AA sequence Show only first row Show all	>Potri.004G084233.1 pacid=42795575 polypeptide=Potri.004G084233.1.p locus=Potri.004G084233 ID=Potri.004G084233.1.v4.1 annot-version=v4.1 METPRSLIQPPTYGSQITILSIDGGGIRGIIPGTILFFLESELQKLDGADARLADYFDVISGTSTGGLLTAMLAAPNKQNRPLFAAKDINAFYLENSPKI FPQDGSPFASAENLIKTLKGPKYDGKFLHSIVKEKLGDTRLHQTLTNIVIPTFDIKNLQPTIFSSYRVKNNPSTDALLSDICIGTSAAPTYLPAYYFQTK DPSGNVREFNLIDGGVAANNPTLVAISEVSKEINRYNPDFFPIKPMEYDRFLVLSLGTGTAKSEGKYDADEAARVSWDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.004G084233 [exp]	0	1
					Potri.005G099050 [exp]	2.82	0.8540
					Potri.010G072200 [exp]	3.74	0.9209
AT3G17070			Peroxidase family protein (.1)		Potri.004G006350 [exp]	5.47	0.8536
					Potri.001G225804 [exp]	8.00	0.8183
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135400 [exp]	9.79	0.8527	Pt-LTP1.2
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	15.87	0.8284
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G175700 [exp]	17.14	0.7682	PtrPDR12
AT1G05440			C-8 sterol isomerases (.1)		Potri.008G154400 [exp]	19.13	0.6678
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.004G033100 [exp]	20.12	0.8068	MYB.53
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	21.90	0.8032

Compare expression of checked genes

Potri.004G084233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.