Plant FIBer expression Database

Potri.004G084700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G35540 353 / 3e-116 zinc ion binding;transcription regulators (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014847
[exp]
438 / 4e-149 AT4G35540 412 / 3e-139 zinc ion binding;transcription regulators (.1)
Lus10030407
[exp]
99 / 2e-23 AT4G35540 90 / 8e-21 zinc ion binding;transcription regulators (.1)
PFAM info
Representative CDS sequence
>Potri.004G084700.1 pacid=42794820 polypeptide=Potri.004G084700.1.p locus=Potri.004G084700 ID=Potri.004G084700.1.v4.1 annot-version=v4.1
ATGTCCTGCAAAGCTTGTGGGCTCAGAACCCTTATCAGGGACGATGCAACAGAGAACATGATATGTGATTCATGTGGTACAGTCCAGGATTTCGCCAACT
ATCAAGAACGTACCTTTAACATTAATGGGCCAACAGGTGTGTTTATAAGTATAGGCTCTTCAGGTTGTGGTAGTGTTTTGAATTATAGAGAGAAGAAGAT
TTATGAAGCAAATAATTTAATAGATGATATTGTTTTTAAGGTAGGGTTAACTGGTGGTTCAAAAGTAAGTGAAATTAGAGATATGATTAGTAAAGTTACT
GATGGGGAGTTTGGTTCAAGTGAGAGTAGATGGTTTAGTATTTTTGTTGGTGCTTGTGTTTATGTTGTAATGAGGAATGGTGATAAAAGCTTGAGCATTG
AGGAGGTGAGTAGTGTTGTTGGGTGTGATATTCATGAATTGGGGAGGATGGTCGTGAGGGTTGTTGAGCATTTGGGGATGAAGTTGCCAGGTTTTGATAT
AGTGGGCAGTTTTGAGAGGGTGGTTAGGAGTTTGTCGATTTCGGACAGGGTTGAGGGGGATGTGTTGGAGAGGATGAGGAAACAAGGTATTTTTTTAGTG
CAATGTGCTGTGAAGTGGTTTTTGACTACAGGGAGGAGGCCGTTGCCGGTTGTTGTGGCTGTTTTGGCTTTGGTTGCTGAGTTGAATGGGGTGGAGGGGG
TTAAGATCGAGGAGGTTGCCAGAGAGGTTCATGTAGCGGTGTCTACTTGTAGGTTGAGATACAAGGAATTGTTGGAGGTGATTGCTAAGGTAGCGCAAGA
GATTTTGCCATGGGGGAAGGATGTAAATGTGAAGAATGCAGTGAAGAATGCGCCATTTGTGATTCGATATTTGGAGATGAAATGTATGTCGAAGAGTGGT
GGGGAAAAAAAGGGTTTGGAGAGTACTGAGTTTGATTTGGGAGAAGTGGTTGGTGAGTATTTTAGTAAGAATGTTGTGGAGGATAGTTTGGAATGTGACG
ATTTGCGGTATTTTGAGTTGGAAGATGCTATTGGGTTTGATAAGACTGGCATTGATGAGGCGGATAAGCTTCAGCTTTCACATGAATGCTTATCCATGGT
TTATGACAAGTTCCTGATGGATGGTGGTTGTGGTAGATATATGGAAGAAAGTGGAAAGGTTCTTGGGAGGAAAAGGGAGAGAGAGCTTGAGATTCAGGCA
ACAGAATGGTGGAATGGAAAATCAGAGTTGAGCAAGAAGCTTTTGCTAAAACAGTTATTGGAGAAAGATATAGGATTTAGTGTTATGCCTCCATCTTTTG
TCAATGGTTGTACAACAATTAAGAAGAGGAGAGCAAAGATAAATGCTGCAAAGCTGCGGATTGATAGGATTATGAATCCATGGAATACTGATTCAGGTAG
TGGTAAAGTTTGCACTGTTGAAGGTGCACATGATCGGAAGAGGAAAAGAAAATCACTGGTAAAAGATATTGATTGGGAGGATTTTGTCATTGAGACCCTC
CTTCTTCATCAGGTGAAAGAGGAGGAAATTGAGAAAGGGTATTACAACACCTTGATGGACTTGCATGTTTTCAATTCTGGTACTATGTGA
AA sequence
>Potri.004G084700.1 pacid=42794820 polypeptide=Potri.004G084700.1.p locus=Potri.004G084700 ID=Potri.004G084700.1.v4.1 annot-version=v4.1
MSCKACGLRTLIRDDATENMICDSCGTVQDFANYQERTFNINGPTGVFISIGSSGCGSVLNYREKKIYEANNLIDDIVFKVGLTGGSKVSEIRDMISKVT
DGEFGSSESRWFSIFVGACVYVVMRNGDKSLSIEEVSSVVGCDIHELGRMVVRVVEHLGMKLPGFDIVGSFERVVRSLSISDRVEGDVLERMRKQGIFLV
QCAVKWFLTTGRRPLPVVVAVLALVAELNGVEGVKIEEVAREVHVAVSTCRLRYKELLEVIAKVAQEILPWGKDVNVKNAVKNAPFVIRYLEMKCMSKSG
GEKKGLESTEFDLGEVVGEYFSKNVVEDSLECDDLRYFELEDAIGFDKTGIDEADKLQLSHECLSMVYDKFLMDGGCGRYMEESGKVLGRKRERELEIQA
TEWWNGKSELSKKLLLKQLLEKDIGFSVMPPSFVNGCTTIKKRRAKINAAKLRIDRIMNPWNTDSGSGKVCTVEGAHDRKRKRKSLVKDIDWEDFVIETL
LLHQVKEEEIEKGYYNTLMDLHVFNSGTM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G35540 zinc ion binding;transcription... Potri.004G084700
[exp]
0 1
AT3G25840 Protein kinase superfamily pro... Potri.008G119100
[exp]
2.44 0.9570
AT3G25840 Protein kinase superfamily pro... Potri.010G126900
[exp]
4.24 0.9470
AT1G20920 P-loop containing nucleoside t... Potri.005G257400
[exp]
4.47 0.9456
AT1G20920 P-loop containing nucleoside t... Potri.002G003600
[exp]
4.89 0.9437
AT3G15120 P-loop containing nucleoside t... Potri.011G141400
[exp]
5.47 0.9448
Potri.003G148601
[exp]
7.48 0.9362
Potri.005G043825
[exp]
10.58 0.9407
AT4G15180 SDG2, ATXR3 SET domain protein 2 (.1) Potri.017G041100
[exp]
12.48 0.9135
AT4G15180 SDG2, ATXR3 SET domain protein 2 (.1) Potri.007G119300
[exp]
12.84 0.9154 SDG904
AT5G27230 Frigida-like protein (.1) Potri.005G044100
[exp]
13.07 0.9039

Potri.004G084700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.