Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MAP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59990 712 / 0 MAP2B methionine aminopeptidase 2B (.1.2.3.4) AT2G44180 686 / 0 MAP2A methionine aminopeptidase 2A (.1) AT3G51800 112 / 4e-27 ATEBP1, ATG2, EBP1 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133200 [exp] 751 / 0 AT3G59990 716 / 0.0 methionine aminopeptidase 2B (.1.2.3.4) Potri.006G102200 [exp] 107 / 3e-25 AT3G51800 573 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Potri.016G119700 [exp] 105 / 1e-24 AT3G51800 565 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000403 [exp] 653 / 0 AT2G44180 682 / 0.0 methionine aminopeptidase 2A (.1) Lus10027121 [exp] 444 / 1e-155 AT2G44180 475 / 7e-168 methionine aminopeptidase 2A (.1) Lus10005292 [exp] 386 / 9e-134 AT3G59990 419 / 6e-147 methionine aminopeptidase 2B (.1.2.3.4) Lus10010592 [exp] 259 / 6e-83 AT3G59990 292 / 6e-96 methionine aminopeptidase 2B (.1.2.3.4) Lus10003379 [exp] 103 / 1e-23 AT3G51800 597 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10027818 [exp] 99 / 2e-22 AT3G51800 602 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10005046 [exp] 99 / 3e-22 AT3G51800 604 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10002851 [exp] 98 / 3e-22 AT3G51800 595 / 0.0 A. THALIANA ERBB-3 BINDING PROTEIN 1, metallopeptidase M24 family protein (.1.2.3) Lus10023798 [exp] 55 / 9e-08 AT2G47980 371 / 3e-111 sister-chromatid cohesion protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00557 [poplar] [flax] Peptidase_M24 Metallopeptidase family M24
Representative CDS sequence Show only first row Show all	>Potri.004G084800.4 pacid=42793946 polypeptide=Potri.004G084800.4.p locus=Potri.004G084800 ID=Potri.004G084800.4.v4.1 annot-version=v4.1 ATGATGGCGAGTGAAGACTTGAAAACCCAAGTTCCTGTTGAAGAAAATGGGACTAAAGAAGAAGAGAAAAATGGGAATTTAGAGGCTTCAACTAGCAATG AAAACGGTGATTCTTCTGATGTTTCTTCTGTGATACAAAAAGAAGATGAAGAAGGAGAAGAAGAAGAGACCAAAGAAGTTACAAAGAAGAAAAAGAAGAA AAATAAAAGCAAGAAAAAGAAGGAATCACCAAAGCAGACTGATCCACCCTCTATTCCTGTTGTTGATCTCTTTCCATCTGGGGAGTTTCCTGAAGGTGAA ATTCAACAGTACAAAGATGATAATTTATGGAGGACTACGTCTGAAGAGAAAAGAGAGTTGGAGCGTCTTGAAAAGCCAATGTATAATTCAGTTCGACAGG CAGCAGAAGTTCATCGCCAGGTACGGAAGTATATGAAAAGCATTTTGAAACCTGGAATGTTAATGATGGATCTCTGTGAGACCTTGGAGAACACAGTTCG TAAGCTAATATCAGAGAATGGTCTACAAGCCGGCATTGCATTTCCTACTGGATGCTCTCTGAACTGGGTCGCTGCTCATTGGACCCCAAATTCAGGGGAT AAGACTGTGCTTCAGTATGATGATGTGATGAAATTGGATTTTGGGACCCATATTGATGGACATATCGTGGACTGTGCATTTACAGTGGCATTCAACCCTA TGTTTGATCCCCTACTTGAAGCTTCACGTGAGGCAACTAACACGGGAATCAAGGAATCTGGGATTGATGTGCGTCTTTGTGATGTTGGTGCTGCCATCCA AGAAGTCATGGAATCATATGAGGTTGAAATTAATGGAAAGGTGTTTCAAGTTAAGAGTATCCGAAATTTGAATGGGCACAGCATTGGACCCTATCAGATT CATGCTGGAAAATCTGTTCCTATAGTTAAAGGAGGGGAGCAGACAAAGATGGAAGAGGGTGAATTTTTTGCAATTGAAACATTTGCATCTACAGGCAAAG GATATGTAAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGTTGGCCATATCCCTCTGAGGTTGCCAAGAGCAAAGCAACTGCTAGCAAC AATCAATAAGAACTTCTCTACATTGGCCTTTTGTAGAAGGTATTTAGATCGCCTCGGAGAGACTAAATATTTAATGGCACTAAAAAATTTGTGCGATTCT GGCATCATTCAGCCTTATCCTCCTCTATGCGATGTTAAGGGCAGTTATGTATCCCAATTCGAGCATACCATCCTACTGCGGCCAACCTGCAAAGAGGTCA TATCGAGAGGCGATGACTACTAG
AA sequence Show only first row Show all	>Potri.004G084800.4 pacid=42793946 polypeptide=Potri.004G084800.4.p locus=Potri.004G084800 ID=Potri.004G084800.4.v4.1 annot-version=v4.1 MMASEDLKTQVPVEENGTKEEEKNGNLEASTSNENGDSSDVSSVIQKEDEEGEEEETKEVTKKKKKKNKSKKKKESPKQTDPPSIPVVDLFPSGEFPEGE IQQYKDDNLWRTTSEEKRELERLEKPMYNSVRQAAEVHRQVRKYMKSILKPGMLMMDLCETLENTVRKLISENGLQAGIAFPTGCSLNWVAAHWTPNSGD KTVLQYDDVMKLDFGTHIDGHIVDCAFTVAFNPMFDPLLEASREATNTGIKESGIDVRLCDVGAAIQEVMESYEVEINGKVFQVKSIRNLNGHSIGPYQI HAGKSVPIVKGGEQTKMEEGEFFAIETFASTGKGYVREDLECSHYMKNFDVGHIPLRLPRAKQLLATINKNFSTLAFCRRYLDRLGETKYLMALKNLCDS GIIQPYPPLCDVKGSYVSQFEHTILLRPTCKEVISRGDDY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Potri.004G084800 [exp]	0	1	Pt-MAP2.2
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.005G112800 [exp]	7.81	0.7326
AT5G50310			Galactose oxidase/kelch repeat...		Potri.015G090100 [exp]	8.24	0.7148
AT5G19485			transferases;nucleotidyltransf...		Potri.001G271800 [exp]	19.41	0.6797
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G070200 [exp]	20.00	0.7084
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.010G064100 [exp]	28.49	0.6977
					Potri.005G121975 [exp]	29.29	0.6579
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.006G258300 [exp]	30.59	0.7043
AT5G17590			Putative membrane lipoprotein ...		Potri.019G043701 [exp]	52.05	0.7036
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.005G201400 [exp]	58.78	0.6860
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.017G042200 [exp]	59.89	0.6395

Compare expression of checked genes

Potri.004G084800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.