Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 821 / 0 Protein kinase superfamily protein (.1) AT2G48010 364 / 1e-117 RKF3 receptor-like kinase in in flowers 3 (.1) AT1G56145 257 / 5e-74 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29730 255 / 2e-73 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29720 255 / 3e-73 Leucine-rich repeat transmembrane protein kinase (.1) AT1G70530 245 / 4e-72 CRK3 cysteine-rich RLK (RECEPTOR-like protein kinase) 3 (.1) AT1G07650 251 / 1e-71 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G56140 247 / 2e-70 Leucine-rich repeat transmembrane protein kinase (.1) AT1G01540 236 / 3e-70 Protein kinase superfamily protein (.1.2) AT4G01330 236 / 3e-70 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133000 [exp] 1087 / 0 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 1079 / 0 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 633 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 462 / 2e-160 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 363 / 2e-116 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 356 / 1e-113 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 344 / 7e-110 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 340 / 3e-109 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.004G063600 [exp] 264 / 4e-81 AT1G07650 479 / 4e-160 Leucine-rich repeat transmembrane protein kinase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001295 [exp] 795 / 0 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10012701 [exp] 777 / 0 AT1G11050 760 / 0.0 Protein kinase superfamily protein (.1) Lus10029711 [exp] 562 / 0 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10028552 [exp] 462 / 1e-155 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10018861 [exp] 456 / 3e-153 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10018855 [exp] 446 / 5e-152 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10028551 [exp] 449 / 2e-150 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1) Lus10028549 [exp] 438 / 6e-150 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10029714 [exp] 419 / 1e-139 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10042678 [exp] 382 / 1e-123 AT2G48010 781 / 0.0 receptor-like kinase in in flowers 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.004G084900.1 pacid=42794723 polypeptide=Potri.004G084900.1.p locus=Potri.004G084900 ID=Potri.004G084900.1.v4.1 annot-version=v4.1 ATGGGGGGCAGCCCTGATCTTGATCTGTTAAGGTTTCTTGTCTTGATATTACTCTCTCGCGCACACGCCTATGCAGTAGCAGAAACCACCACCAGTACAG CAGCAACATGTCCCATGGACTTCAGCTATGTCTTAAGAATCCCATGGAACAGGAGTCTTTGTCAGAACTTCCAACCTCCTGATGAAAATGACAATACCAA CACCACTAGCAAGCCCCAATGTTGTCAAAGTTTACTCTCCCTCTTTGGGGTCGCTGTAGCCCAACATCTCAAAGAAACCTCTCTTTTTCGTCTCCCAAAC TTAGCCACCTCTAATTCTTGCCTCCGAGATTACCAGTCAAAGCTCAACTCTTTTTCTCTTGCCAACAATCTCGTCTCATACTGCTTGGACCCTTTACAGT TTGTAACAAAACCAAACATCTGTGCCCGTATACAGTCATTACAAGATTGGGTTGCTCGACTTGGTAAGTCAACTTCGCTTGATACAGCTTGCAAGTCTGA TCTCACTGATAATACAGCTTGTGATGGATGTGTTAGAGCTGGTTATAAAGTACAGTCCACGTTGTTGTCTATTGATAGTAATCAAACCCATGCTACAAGT TGTTTTTACTTTGCAATTCTTTATGCTGCTGGTATTGTTAATGAGTTTGGTCCTGAAAGTGATGGTGCTGTTTCATGTATATTGGGTTTGGAGTTAAATT CACGTGTTGGTTCAGCTAGTAAGGCTCATTCTGCTCTTGTTTTTGGCTTAACTGGTGCCGGTGTTGCTCTTTTGGTAATGTTTAGTTTGTTAGGATTGTA TTTTTGGTATGATAAGAAATGGAGAAGGAAAAAGAATTCAGGGTTTGGTTTTGATTTAGATGAACAGCAAGGGTCTAGGCCTAAACTGAGGCCGAATACA GGGTCAATTTGGTTTAAAATTCAGGATCTTGAGAAGGCAACACATAATTTTTCGCAGAATAATTTTATAGGGAGAGGTGGGTTTGGTTTTGTTTACAAGG GGACCTTATCTGATGGGACAGTGGTGGCTATTAAAAGGGTTATAGAATCTGATTTTCAGGGTGCTGCGGAGTTTTGCAATGAGGTTGAGATTATTAGCAA CTTGAAGCACAGGAATTTGGTCCCACTCAGAGGGTGTTGTGTGATTGATGATGATGATGGAAATAATGATGAGAGAGGGAATCAAAGGTATCTTGTTTAT GATTACATGTCAAATGGAAATCTCGATGACCATCTATTTCCATCATCAGGTAATCAAATTGGAAAGCAACCTTTAAGCTGGCCTCAAAGAAAGAGCATAA TTTTGGATGTGGCAAAGGGATTAGCTTATTTGCACTATGGAGTGAAGCCTGCAATATATCATAGAGATATCAAGGGGACCAATATATTGTTAGATGCTGA TATGAGAGCAAGAGTTGCCGATTTTGGGTTGGTAAAGCAGAGTAAGGAAGGACAATCGCATCTTACTACAAGAGTGGCTGGAACTCATGGGTACTTAGCA CCCGAATATGCTCTTTATGGTCAATTGACTGAGAAGAGCGATGTTTATAGCTTTGGAGTGGTTGTTTTGGAGATAATGTGTGGGAGAAAAGCTCTTGATT TGTCTTCAGGGGGTTCGCCTCGTGCTCTCTTGATCACCGACTGGGCCTGGTCGTTGGTGAAAGCTGGAAAAGTGGAAGAGGCTTTGGATGCTTCTTTGTT GAGATGTGGGGATTCTTCTAATTCAAATCCGAAAGGGATAATGGAGAGGTTTGTGCTGGTTGGGATTTTGTGTGCTCATGTAATGGTGGCTCTAAGGCCA ACCATTCTTGTTGCACTGAAAATGTTAGAGGGAGATATTGAAGTTCCACCAATTCCAGATCGACCAATGCCTCTTGGGCATCCTTCGTTCCATGCTGATG GCAATAACTTCAGCATCTCACCAGCTTTGAGTGGGGACCAAAATTACTTTCTGGAGACATGCTTAGGTAAACACTAA
AA sequence Show only first row Show all	>Potri.004G084900.1 pacid=42794723 polypeptide=Potri.004G084900.1.p locus=Potri.004G084900 ID=Potri.004G084900.1.v4.1 annot-version=v4.1 MGGSPDLDLLRFLVLILLSRAHAYAVAETTTSTAATCPMDFSYVLRIPWNRSLCQNFQPPDENDNTNTTSKPQCCQSLLSLFGVAVAQHLKETSLFRLPN LATSNSCLRDYQSKLNSFSLANNLVSYCLDPLQFVTKPNICARIQSLQDWVARLGKSTSLDTACKSDLTDNTACDGCVRAGYKVQSTLLSIDSNQTHATS CFYFAILYAAGIVNEFGPESDGAVSCILGLELNSRVGSASKAHSALVFGLTGAGVALLVMFSLLGLYFWYDKKWRRKKNSGFGFDLDEQQGSRPKLRPNT GSIWFKIQDLEKATHNFSQNNFIGRGGFGFVYKGTLSDGTVVAIKRVIESDFQGAAEFCNEVEIISNLKHRNLVPLRGCCVIDDDDGNNDERGNQRYLVY DYMSNGNLDDHLFPSSGNQIGKQPLSWPQRKSIILDVAKGLAYLHYGVKPAIYHRDIKGTNILLDADMRARVADFGLVKQSKEGQSHLTTRVAGTHGYLA PEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSGGSPRALLITDWAWSLVKAGKVEEALDASLLRCGDSSNSNPKGIMERFVLVGILCAHVMVALRP TILVALKMLEGDIEVPPIPDRPMPLGHPSFHADGNNFSISPALSGDQNYFLETCLGKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11050			Protein kinase superfamily pro...		Potri.004G084900 [exp]	0	1
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.012G022100 [exp]	8.94	0.8409
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.005G234500 [exp]	9.32	0.8569	Pt-COL6.1
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.001G452700 [exp]	11.61	0.8186
AT3G15760			unknown protein		Potri.018G131100 [exp]	16.91	0.7399
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Potri.001G365500 [exp]	23.10	0.7868
					Potri.001G427901 [exp]	28.30	0.8487
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.011G054300 [exp]	28.54	0.8432
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.010G061800 [exp]	28.63	0.7894
AT1G68360	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.008G123100 [exp]	32.40	0.8263
AT5G47580		ASG7	ALTERED SEED GERMINATION 7, un...		Potri.001G123100 [exp]	34.39	0.7634

Compare expression of checked genes

Potri.004G084900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.