Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37550 80 / 2e-18 unknown protein AT1G66190 54 / 6e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G131300 [exp] 217 / 1e-72 AT5G37550 63 / 2e-12 unknown protein Potri.015G084200 [exp] 45 / 3e-06 AT4G24700 88 / 6e-23 unknown protein Potri.012G086300 [exp] 45 / 7e-06 AT4G24700 70 / 1e-15 unknown protein Potri.012G086000 [exp] 44 / 1e-05 AT4G24700 73 / 4e-17 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020807 [exp] 81 / 3e-19 AT5G37550 55 / 2e-09 unknown protein Lus10041942 [exp] 65 / 3e-13 AT4G24700 65 / 7e-14 unknown protein Lus10017951 [exp] 56 / 5e-10 AT4G24700 68 / 5e-15 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.004G085100.1 pacid=42795765 polypeptide=Potri.004G085100.1.p locus=Potri.004G085100 ID=Potri.004G085100.1.v4.1 annot-version=v4.1 ATGCCTTCTATCACTCCCTTCAACATTTTCATGGAGAAAAAGAAACCTAAAGGTGGTGGCAGTACTGATGATTTAGCCCTAGTAAAAGCAGCTGCATGGG CATGGTACCACCATGGTTCAGGGTCTGAAGGAAGGCCGATTTGTGAATTTGATGTTACAAGAACTCGTCAAGCTCCAAGACCATCAAGATACAAGCTAGA AGCTACGAGAATAATGAAGGCAGATGCCATGGGATCAGGATCAGAAACGCCGAGTCCAATCCGCACAGACAATTCTCTTCTTGATAAATATGAGGTAGAG AGCATTTCAAAGCAACTTGACTATCTTATAGAGTCAAGCAGCAACAGATTTTATGGCTTCAAGATAGATCATCTTGATCATGACCAAAGAAGTATCTCGT CATTGGATAGTGATCAAACTGGCGGAATGAAGCAGAAGAAGAAGGACAAGAAGAAGAAGACTTTTTTACAAGGGTTTTGGCCAAGACATTCGGTTGTTTG TGGCACAAAGGGAGATGTGGACACAAGAGCCTTAGTGCGTTGTGGCAGCGGCAGCGGCCGGAAAGTCATATTCCGGTAG
AA sequence Show only first row Show all	>Potri.004G085100.1 pacid=42795765 polypeptide=Potri.004G085100.1.p locus=Potri.004G085100 ID=Potri.004G085100.1.v4.1 annot-version=v4.1 MPSITPFNIFMEKKKPKGGGSTDDLALVKAAAWAWYHHGSGSEGRPICEFDVTRTRQAPRPSRYKLEATRIMKADAMGSGSETPSPIRTDNSLLDKYEVE SISKQLDYLIESSSNRFYGFKIDHLDHDQRSISSLDSDQTGGMKQKKKDKKKKTFLQGFWPRHSVVCGTKGDVDTRALVRCGSGSGRKVIFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37550			unknown protein		Potri.004G085100 [exp]	0	1
AT2G03440		ATNRP1	nodulin-related protein 1 (.1)		Potri.010G161200 [exp]	5.38	0.8590
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116000 [exp]	15.23	0.8207
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.001G323100 [exp]	17.02	0.8289	FBL3,Pt-IPS1.2
AT4G23750	AP2_ERF	TMO3, CRF2	TARGET OF MONOPTEROS 3, cytoki...		Potri.001G094800 [exp]	18.49	0.8274
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.008G081500 [exp]	23.32	0.7837
AT3G61180			RING/U-box superfamily protein...		Potri.002G155200 [exp]	39.77	0.7853
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.003G167800 [exp]	44.66	0.7697
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.017G036800 [exp]	51.38	0.7768	UBQ11.2
AT2G30620			winged-helix DNA-binding trans...		Potri.002G199900 [exp]	65.03	0.7661	HON908
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.002G106400 [exp]	67.04	0.7330

Compare expression of checked genes

Potri.004G085100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.