Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37590 529 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G53080 48 / 1e-05 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 47 / 3e-05 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G10840 44 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G27500 44 / 0.0002 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G173400 [exp] 60 / 3e-09 AT4G10840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G080100 [exp] 56 / 5e-08 AT1G27500 756 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G100400 [exp] 55 / 1e-07 AT4G10840 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G075300 [exp] 52 / 7e-07 AT1G27500 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G087800 [exp] 48 / 2e-05 AT4G10840 864 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G143200 [exp] 46 / 8e-05 AT4G10840 843 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G208900 [exp] 44 / 0.0002 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 44 / 0.0003 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.015G010800 [exp] 43 / 0.0007 AT5G53080 579 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020811 [exp] 374 / 3e-125 AT5G37590 405 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004036 [exp] 333 / 2e-109 AT5G37590 360 / 3e-120 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020809 [exp] 150 / 2e-42 AT5G37590 94 / 2e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004034 [exp] 135 / 2e-36 AT5G37590 77 / 2e-16 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042120 [exp] 53 / 4e-07 AT1G27500 828 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002376 [exp] 52 / 1e-06 AT1G27500 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017009 [exp] 47 / 7e-05 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021336 [exp] 46 / 7e-05 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10022231 [exp] 45 / 0.0001 AT3G27960 788 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008786 [exp] 44 / 0.0004 AT3G27960 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13374 [poplar] [flax] TPR_10 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.004G085200.1 pacid=42793772 polypeptide=Potri.004G085200.1.p locus=Potri.004G085200 ID=Potri.004G085200.1.v4.1 annot-version=v4.1 ATGCATATGAGACAACTGGCAGCTAAGTTTCTGAGGAGAACCCATTTTCCTCCTCAGAGATTCTCTTCTTCTAGTGAAATTACAACAAGCAATGCCTTGC CCAATTCACTCTCCAGTAAAACAAAATGTTCCTACAAATATGGTTTTGGAGGGCCTAGTTGGAGGATGAACTCTAGGGATTGTTATCTATGGACTATTCT TGCTGGACAAGCTGCAATAATTCTTGGGATAAACGCCAACCCTGTCTTAGCAGACGAGCCTCGCGAAAGCAGTTCACAAAATGATTTAGATACAGATAGC ATGTTTGGGTTTCGCAAAATTGAGGATGGTTCTGTAATATCCAATGAACATACAGCAAAATGGAGGCTTTTTTCTGATAAAGGGAGGGAAGTCTTCCTGC AGGGGAAATTGGATCAAGCTGAAAAGTTCTTCTTTTCTGCTCTACAAGAAGCAAAAGAGGGTTTCGGGGAGAAGGATCCTCATGTTGCCTCATCTTGCAA CAACTTGGCAGAGCTATTTAGAGTTCAGAAGCAATTTGATAAAGCAGAACCTTTGTATTGGGAGGCCATCAAAATTCTAGAGGAATCATTTGGGCCAGAA GACATCCGTGTGGGTGCTGCGCTTCACAACCTTGGGCAGTTTTATCTCATGCAGCGGAAACTGGATGAAGCTGACAAGTGCTACGAGCGTGCTGTGAAGA TAAAAAGGCGTGTTTTAGGACTCAACCATACAGACTATGCAGATACACTGTATCATCTCGGAATGGTGCTTTATCTCCTTGGAAAAGAGAAGGATGCTGA AGCCCTCATTCAGGAATCTATTAAGATATTAGAGGAAAATGGCATGGGGGACTCAATTACTTGCATAAGGAGATTGCAATTTCTCTCTCAGATGTATCTA AAATCCAATCGTCTTGCTGAAGCCGAGGATGTACAAAGGAAGGTGCTGCAGATTATGGAACTATCAAAGGGATGGAATTCCATGGACACAGTAATAGTAG CTGAAAGGCTGGCCCTAATCCTACAGTCAATTGAGAAGATAAAAGAAGCAAAAGAACTACTTGAAAGGTGTCTTGAGGCTCGGAAGTCCTTGCTTCCCGA AGATCACATTCAGATTGCTGCAAATCTGCTTCATATTGCAAGGGTTGCAATGTTGAATTCAAATCGGCTGAGAAAGATAAATATTTCTGAAGCAATTGCT GAGCTTGACAAGGCAAAAGATCTTTTGCACAGTTCTACAAGGATAGCACGCCATGTCTTAAATAAATTGAGAATACAAAAAGGGAAAAAGCAGAAGAATG GAGCATCTGAAATGAAAAGAGAGGGGCATGCGGCATTGGTCATACTGTTGCAATCACTGGATACTCTTGGACTTGTGGAGACTACAAAACAAGAGTTACT GGAGTCACAGGGAGAGCATTTACCCAACGTTGAAGCCGAAAATGTCCTTTTGCAATGCATTTCTTCTTACAAAGAGTTTGAAGCTGAGAAGTTAATTTCT GATTCCCCTAAAGTAAAGACCGAGTATCTTTCATGTATGAAGCATCTTTTGAGCTTGATGATCGATACTGGTAACAAAGATAAGGTCACCTTAAAGGATT TGGATGATGAAATCAAGCGTGTTGAAGCTGAGATTTATGATCGCTCAAAACATAAACCCTAA
AA sequence Show only first row Show all	>Potri.004G085200.1 pacid=42793772 polypeptide=Potri.004G085200.1.p locus=Potri.004G085200 ID=Potri.004G085200.1.v4.1 annot-version=v4.1 MHMRQLAAKFLRRTHFPPQRFSSSSEITTSNALPNSLSSKTKCSYKYGFGGPSWRMNSRDCYLWTILAGQAAIILGINANPVLADEPRESSSQNDLDTDS MFGFRKIEDGSVISNEHTAKWRLFSDKGREVFLQGKLDQAEKFFFSALQEAKEGFGEKDPHVASSCNNLAELFRVQKQFDKAEPLYWEAIKILEESFGPE DIRVGAALHNLGQFYLMQRKLDEADKCYERAVKIKRRVLGLNHTDYADTLYHLGMVLYLLGKEKDAEALIQESIKILEENGMGDSITCIRRLQFLSQMYL KSNRLAEAEDVQRKVLQIMELSKGWNSMDTVIVAERLALILQSIEKIKEAKELLERCLEARKSLLPEDHIQIAANLLHIARVAMLNSNRLRKINISEAIA ELDKAKDLLHSSTRIARHVLNKLRIQKGKKQKNGASEMKREGHAALVILLQSLDTLGLVETTKQELLESQGEHLPNVEAENVLLQCISSYKEFEAEKLIS DSPKVKTEYLSCMKHLLSLMIDTGNKDKVTLKDLDDEIKRVEAEIYDRSKHKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37590			Tetratricopeptide repeat (TPR)...		Potri.004G085200 [exp]	0	1
AT5G22330		ATTIP49A, RIN1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.009G160600 [exp]	3.60	0.7001
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.007G131500 [exp]	7.74	0.6612
AT5G02130		NDP1	Tetratricopeptide repeat (TPR)...		Potri.002G091400 [exp]	16.12	0.6329
AT3G03420			Ku70-binding family protein (....		Potri.017G120800 [exp]	21.16	0.6328
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	27.42	0.6614
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	37.58	0.6417	Pt-PURE.2
AT5G60230		ATSEN2, SEN2	splicing endonuclease 2 (.1.2)		Potri.014G083401 [exp]	38.41	0.6350
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Potri.009G077800 [exp]	39.38	0.6368
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.013G000400 [exp]	39.59	0.6311
AT5G58450			Tetratricopeptide repeat (TPR)...		Potri.013G152800 [exp]	43.81	0.6320

Compare expression of checked genes

Potri.004G085200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.