Plant FIBer expression Database

Potri.004G085500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37630 1050 / 0 EMB2656 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004038
[exp]
1203 / 0 AT5G37630 1102 / 0.0 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
Lus10020813
[exp]
1197 / 0 AT5G37630 1087 / 0.0 EMBRYO DEFECTIVE 2656, ARM repeat superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF12719 Cnd3 Nuclear condensing complex subunits, C-term domain
Representative CDS sequence
>Potri.004G085500.1 pacid=42794712 polypeptide=Potri.004G085500.1.p locus=Potri.004G085500 ID=Potri.004G085500.1.v4.1 annot-version=v4.1
ATGACCAGAGATATGGATGCCACAGAGAAACTGATTCAAAAAATCTCAAAAATTCTTGAAGAAACAAAAACTTCAAATGCTACACACATCAGAAAGCTAA
AAGAGCTGTCTTTACTCTTATTTTCGAAAAGATCCCCAAATCAGAGTCCCCAAATCCCTAATTCTTTTCAATTCGCTTCTGCCTTTTGCAAATCCCTAAC
TCCTCTTTTCCTCTTCCAACGACGGTCTGCCTCTGCTGAGCGTGTTGTTAAGTTTGTCTCTGTCTTTGCCGCCTCCACTACGGCGCGTGATGGGAAAGAG
AATGAGGGGGCGGGTGCTGCTGGTGATGGGTTTCTGGAGGAGTTCCTTAGGTTTTTGATGACTGCGAGTTTGGCTGCTAATAAGAGTGTTAGATTTCGAG
CTTGTCAAATTATCTCTGAGATTATATTGAGACTGCCAGATGACGCGGAAGTAAGCAATGAGCTCTGGGATGTGGTTATAGAATCCATGAAGCTAAGAGT
TGCAGACAAAGTTCCAGCTATTCGCACATTTGCAGTTAGAGCTCTTTCACGCTTTGCAAATGATACTGAGAATAGTGATATTCTGGATTTGTTTCTTGAA
GTGCTTCCCTTGGAGCAGAATGCAGAGGTTCGTAAGACAATTGTATTAGCTTTGCCACCTTCCAATGCAACCTCACCAGCAATCATTGATTGCACCCTGG
ATATGAGCGAGTCAGTCCGCAAAGCTGCATTCTGTGTTCTAGCTAATAAATTTCCTCTTCAAAGTCTCAGCATAAAGCTCAGGACAGTAATTCTACAGAG
AGGACTTGCTGATCGTTCTGCAGCTGTTGCAAAAGAATGTTTAAAGTTGATGAGAGATGAATGGCTTTCTAAGTGCTGCAATGATGATCCCATTGAACTT
CTTAAGTATCTTGATGTTGAAACCTATGAATTGGTTGGGGAATCTGTGATGGAGGCTCTATTAAAAGATGGATTAATAAAATTACATGGCGATCGGAGTA
TCCGGCAGTATATATTATCAACCTTTGGTGAAAATGGAGAGGAACCTGAAAACTGCTCTGCAAGCATCCAGCTAATGGAACCGGAGTTTGCTCTTTATTG
GAAAACTGTGTGCAGGCACTTGCAGACAGAAGCACAGGCGAAGGGCTCTGATGCTGCAACTACAATGGGCACTGAAGCTGCAGTGTATGCAGCTGAAGCT
TCAGACAACAATGATCTTCTCGAGAGGATTCTTCCTGCAACAGTTTCAGATTATGTAGTTTTGGTCGGAGCTCATATAGATGCTGGACCAAATTATCGTT
TTGCATCTCGGCAGCTACTATTGCTTGGTGCAATGCTTGATTTTTCTGACTCTACAAGCAGGAAGGTTGCTAGTGCATTTGTACAAGACCTGTTGCACAG
GCCCTTAGATCATGAAGTGGATGATGAAGGGAACAAGGTTATCATAGGAGATGGAATAAACCTTGGTGGCGACAAAGAATGGGCTGGTGCAGTGTCCAGT
TTGGCAAAGAAAGTCCATGCTGCTGCTGGTGAATTTGAAAAAGTTTTTCTTGCAGTTGTAGAAGAACTTGCCACGCCCTGTAGGGAGAGAACAGCAGACT
TCATGCAGTGGATGCACAGCCTTGCTGTTACTGGTCTTCTTTTGGAAAATGCAAAATCATTGTACTGGCTTCAAGGGAAGGCTATTGAGCCTATTGAATT
ACTGCAGTCATTACTGCTTCCTGGGGCAAAGCATGCTCACTTGGATGTGCAGAGGGTTGCTATCAGGTGTCTTGGCCTTTTTGGCTTATTAGAGAAAAAG
CCAAGTGAAGAACTATTGAAGCAGTTGAGGCTTTCTTTTGCTAAGGGCCCTGCTCCAGTTAGCATAATGGCGTGCAAGGCTTTAATTGATCTTGTCATGT
GGCACGGTCCTCAGGAAGTTGACAGGGTGATTGGACTAGATCATTCATCCAATTTTCAGGGTGACAAGATGGCAGTTGATCTTGTGGACTTTTCTAAGGC
TGATGACAATTTGAATGTTGAATTGCTTGACCTCTTATATGCTGGCTTTGATAGAAATAATTGGGGAGATGTCGAAACTGAAGAAAATGAGACAGTGCAA
GCTGCTCTTGGTGAAGGTTTTGCTAAGATTCTTCTCCTTAGTGAGAATTATCCAAGCATACCAGCTGCTTTACACCCTTTGCACTTAGCTAAGCTCATTA
AATTGTATTTCAGTAATGAAACAAAAGAGCTGCAGAGGTTGAAACAATGTTTATCCGTGTTCTTTGAGCATTACCCATCACTATCAGCAAATCATAAGAA
GCATTTGTCAAAGGCGTTCATTCTAGTGATGCGTTCTATGTGGCCAGGCATCTATGGAAATGCTGGAGGTTCTGCAGTAGTGGTTTCTAATATGCGTAAG
CGTGCAGTCCAAGCATCACGATTTATGTTGCAGATGATGCAGGCCCCCTTGTATGCTAAACCGACTGAAAATGGGGGTGAGAATTGTAGCACGCAACCAA
CTGAAACTGTAGATGGCTCTTTGCAACCTTCATTTGAATGTTCAGATGAGGGACTTGGTATTCGCATTGCTGCAGAGGTGGCAAGCTTCACTACAAAGAA
GACACCAGCTGAGAGGTCATATGTTTCAGCACTATGTAGAATACTTGACTTGCTCCATTTTCGGGTATCGGAACAAGGTGCAATAAAATTAATGAGGAAA
CTCTTGAATCGTGTGGCTGGAAATGTATCGACAGAGAAAGACCTTGTAAAGGAGCTGAAACAGATGGCTGAACGTCTCAAGTCAGTAGATAAGCAACCAG
AAGAGGAGCTATTGGAGGATCAAGCAAAACTTATTTTGGGGAAACTGGAAGTCGATATCAACTTGGATGTTGATAGCCCTGCTGCAATGCCACAAACACC
AGCCCCTCCGCAATCAACTAGACCATCACGTACCAGGAGACAGGCTAGGCATGAAGACTCTTCTGATGAAGAAGCCTCACCAACCACTGTTGTTCAGACT
GCCCCTCGTACTATAGGTAGCCGCTCACAAAGGGCTAGCAAGACTGCAGCCCTGACCAAGATGACAGCTAATTTAGCTGCTAGGATTGTTGAAATTGATG
ATGAAGAGGAAGGCTCTGAGATGACTTCAGAAGAAGATTCTGACGACTCTGTTCATCATGCTGAATGA
AA sequence
>Potri.004G085500.1 pacid=42794712 polypeptide=Potri.004G085500.1.p locus=Potri.004G085500 ID=Potri.004G085500.1.v4.1 annot-version=v4.1
MTRDMDATEKLIQKISKILEETKTSNATHIRKLKELSLLLFSKRSPNQSPQIPNSFQFASAFCKSLTPLFLFQRRSASAERVVKFVSVFAASTTARDGKE
NEGAGAAGDGFLEEFLRFLMTASLAANKSVRFRACQIISEIILRLPDDAEVSNELWDVVIESMKLRVADKVPAIRTFAVRALSRFANDTENSDILDLFLE
VLPLEQNAEVRKTIVLALPPSNATSPAIIDCTLDMSESVRKAAFCVLANKFPLQSLSIKLRTVILQRGLADRSAAVAKECLKLMRDEWLSKCCNDDPIEL
LKYLDVETYELVGESVMEALLKDGLIKLHGDRSIRQYILSTFGENGEEPENCSASIQLMEPEFALYWKTVCRHLQTEAQAKGSDAATTMGTEAAVYAAEA
SDNNDLLERILPATVSDYVVLVGAHIDAGPNYRFASRQLLLLGAMLDFSDSTSRKVASAFVQDLLHRPLDHEVDDEGNKVIIGDGINLGGDKEWAGAVSS
LAKKVHAAAGEFEKVFLAVVEELATPCRERTADFMQWMHSLAVTGLLLENAKSLYWLQGKAIEPIELLQSLLLPGAKHAHLDVQRVAIRCLGLFGLLEKK
PSEELLKQLRLSFAKGPAPVSIMACKALIDLVMWHGPQEVDRVIGLDHSSNFQGDKMAVDLVDFSKADDNLNVELLDLLYAGFDRNNWGDVETEENETVQ
AALGEGFAKILLLSENYPSIPAALHPLHLAKLIKLYFSNETKELQRLKQCLSVFFEHYPSLSANHKKHLSKAFILVMRSMWPGIYGNAGGSAVVVSNMRK
RAVQASRFMLQMMQAPLYAKPTENGGENCSTQPTETVDGSLQPSFECSDEGLGIRIAAEVASFTTKKTPAERSYVSALCRILDLLHFRVSEQGAIKLMRK
LLNRVAGNVSTEKDLVKELKQMAERLKSVDKQPEEELLEDQAKLILGKLEVDINLDVDSPAAMPQTPAPPQSTRPSRTRRQARHEDSSDEEASPTTVVQT
APRTIGSRSQRASKTAALTKMTANLAARIVEIDDEEEGSEMTSEEDSDDSVHHAE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G37630 EMB2656 EMBRYO DEFECTIVE 2656, ARM rep... Potri.004G085500
[exp]
0 1
AT5G04320 Shugoshin C terminus (.1.2) Potri.010G229100
[exp]
7.34 0.6789
AT4G02070 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS... Potri.008G191051
[exp]
8.66 0.7421
AT4G37210 Tetratricopeptide repeat (TPR)... Potri.007G034200
[exp]
8.94 0.7195
AT3G11210 SGNH hydrolase-type esterase s... Potri.010G189300
[exp]
16.73 0.6643
AT5G64667 IDL2 inflorescence deficient in abs... Potri.002G070401
[exp]
17.60 0.7385
AT3G25980 MAD2 MITOTIC ARREST-DEFICIENT 2, DN... Potri.010G055100
[exp]
22.27 0.6999 MAD2.2
AT3G19640 MRS2-3, MGT4 magnesium transporter 4 (.1) Potri.001G291932
[exp]
24.37 0.7463
AT5G65360 Histone superfamily protein (.... Potri.003G207700
[exp]
25.61 0.7397
AT2G07170 ARM repeat superfamily protein... Potri.006G079500
[exp]
26.05 0.7291
AT1G13890 ATSNAP30, SNAP3... soluble N-ethylmaleimide-sensi... Potri.010G160350
[exp]
27.56 0.6651

Potri.004G085500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.