Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14860 206 / 2e-68 ATNUDT18 nudix hydrolase homolog 18 (.1) AT2G01670 204 / 1e-67 ATNUDT17 nudix hydrolase homolog 17 (.1) AT1G18300 189 / 2e-61 ATNUDT4 nudix hydrolase homolog 4 (.1) AT1G73540 182 / 1e-58 ATNUDT21 nudix hydrolase homolog 21 (.1) AT3G26690 152 / 5e-47 ATNUDX13, ATNUDT13 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, nudix hydrolase homolog 13 (.1.2) AT1G12880 143 / 3e-43 ATNUDT12 nudix hydrolase homolog 12 (.1) AT3G12600 139 / 6e-42 ATNUDT16 nudix hydrolase homolog 16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G131000 [exp] 324 / 6e-115 AT2G01670 223 / 6e-75 nudix hydrolase homolog 17 (.1) Potri.010G107300 [exp] 211 / 2e-70 AT2G01670 223 / 2e-75 nudix hydrolase homolog 17 (.1) Potri.008G134000 [exp] 208 / 4e-69 AT2G01670 218 / 3e-73 nudix hydrolase homolog 17 (.1) Potri.012G044300 [exp] 192 / 1e-62 AT1G18300 199 / 5e-65 nudix hydrolase homolog 4 (.1) Potri.015G035000 [exp] 190 / 7e-61 AT1G18300 195 / 2e-62 nudix hydrolase homolog 4 (.1) Potri.001G029500 [exp] 147 / 3e-45 AT3G12600 219 / 5e-74 nudix hydrolase homolog 16 (.1.2) Potri.001G069200 [exp] 144 / 3e-44 AT1G12880 219 / 2e-73 nudix hydrolase homolog 12 (.1) Potri.003G194900 [exp] 144 / 5e-44 AT3G12600 226 / 2e-76 nudix hydrolase homolog 16 (.1.2) Potri.003G161100 [exp] 139 / 3e-41 AT1G12880 213 / 4e-70 nudix hydrolase homolog 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001598 [exp] 201 / 3e-66 AT1G14860 252 / 1e-86 nudix hydrolase homolog 18 (.1) Lus10034598 [exp] 201 / 3e-66 AT1G14860 248 / 5e-85 nudix hydrolase homolog 18 (.1) Lus10021780 [exp] 199 / 3e-65 AT1G14860 244 / 2e-83 nudix hydrolase homolog 18 (.1) Lus10003713 [exp] 174 / 2e-55 AT1G14860 213 / 8e-71 nudix hydrolase homolog 18 (.1) Lus10008660 [exp] 153 / 6e-47 AT3G12600 221 / 6e-74 nudix hydrolase homolog 16 (.1.2) Lus10026164 [exp] 150 / 2e-46 AT3G12600 221 / 1e-74 nudix hydrolase homolog 16 (.1.2) Lus10024137 [exp] 124 / 4e-36 AT3G12600 211 / 1e-70 nudix hydrolase homolog 16 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.004G085600.1 pacid=42795636 polypeptide=Potri.004G085600.1.p locus=Potri.004G085600 ID=Potri.004G085600.1.v4.1 annot-version=v4.1 ATGGCTGCTGCTGTGGTATCTCAAGAAAATGTTGTAGCTTCTTTGGTGTCTCGTACAGGGAGGCATTTGCAGCGGTATAACAAAGGTCGTCGTCAAGTTG TAGGATGTATACCATACAGATACACGAAAGGAAAGGGTGAAGATGGGTTTCAAGTTCTTGTCATTAGTTCACAGAAAGGAAAGGGGATGTTGTTTCCTAA GGGAGGTTGGGAATCGGATGAAACCATAAAACAAGGAGCGGTGCGAGAGACATACGAGGAAGCCGGGGTGAAAGGCGTTCTTGAGCCCCAATTAGGTGAA TGGACCTTCCAGAGCAGAACTCATGGCACTGATTATGAAGGATACATGTTCCCTTTACGAGTTAAGGAGGAATTAGATTTCTGGCCAGAGAAAACCAATC GCCTGAGAAAATGGATGAGTGTGACAGAAGCAAGAGAATGCTGCCAGCATTGGTGGATGAAGGAAGCCTTAGATGTACTAGTTGACCGTCTCGCAGGTCA GCAACAACTCGATGAGGATGAAGTAGGATCTTGTTCTTTAAGCTTCCAGGCAAAATCTAACTTGTAA
AA sequence Show only first row Show all	>Potri.004G085600.1 pacid=42795636 polypeptide=Potri.004G085600.1.p locus=Potri.004G085600 ID=Potri.004G085600.1.v4.1 annot-version=v4.1 MAAAVVSQENVVASLVSRTGRHLQRYNKGRRQVVGCIPYRYTKGKGEDGFQVLVISSQKGKGMLFPKGGWESDETIKQGAVRETYEEAGVKGVLEPQLGE WTFQSRTHGTDYEGYMFPLRVKEELDFWPEKTNRLRKWMSVTEARECCQHWWMKEALDVLVDRLAGQQQLDEDEVGSCSLSFQAKSNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14860		ATNUDT18	nudix hydrolase homolog 18 (.1...		Potri.004G085600 [exp]	0	1
AT4G24150	GRF	ATGRF8	growth-regulating factor 8 (.1...		Potri.001G082700 [exp]	8.06	0.6757
AT1G01060	MYB	LHY, LHY1	LATE ELONGATED HYPOCOTYL 1, LA...		Potri.014G106800 [exp]	18.97	0.6284
AT4G27310	CO		B-box type zinc finger family ...		Potri.013G150500 [exp]	22.97	0.6338
AT5G06560			Protein of unknown function, D...		Potri.006G199000 [exp]	33.27	0.6041
AT4G22360			SWIB complex BAF60b domain-con...		Potri.016G013400 [exp]	38.78	0.6130
AT4G02810		FAF1	FANTASTIC FOUR 1, Protein of u...		Potri.002G053400 [exp]	42.66	0.5977
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Potri.014G087000 [exp]	43.47	0.6147
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.005G126400 [exp]	46.43	0.5898
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.008G148300 [exp]	47.90	0.5432	CUL3.1
AT2G17570			Undecaprenyl pyrophosphate syn...		Potri.002G039400 [exp]	51.00	0.5743

Compare expression of checked genes

Potri.004G085600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.