Plant FIBer expression Database

Potri.004G085700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G03820 694 / 0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G121500
[exp]
1056 / 0 AT2G03820 710 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Potri.017G137500
[exp]
697 / 0 AT2G03820 464 / 2e-161 nonsense-mediated mRNA decay NMD3 family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025109
[exp]
817 / 0 AT2G03820 763 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
Lus10023975
[exp]
815 / 0 AT2G03820 767 / 0.0 nonsense-mediated mRNA decay NMD3 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04981 NMD3 NMD3 family
Representative CDS sequence
>Potri.004G085700.2 pacid=42796261 polypeptide=Potri.004G085700.2.p locus=Potri.004G085700 ID=Potri.004G085700.2.v4.1 annot-version=v4.1
ATGTGTGTTTGCTTTGTGGATGCTAAATTGTCCGTGTTCTTATTCTTTGTGTTATACTTGCCAGATATGGCCGAAGAAGCAGGCATGTTTATGGTTCATC
AAACAATTGGAAGTGTTTTGTGTTGCAAATGTGGTATTCCTATGCAACCAAATGCTGCTAATATGTGTGTTAAGTGTTTGCGCTCTGAAGTTGACATCAC
TGAAGGTCTAAAGAAGAATGTAATTCTTTTACATTGCCCGGAGTGTGATACCTACTTGGATCCACCTAGTACGCGGATTAGGGCCCAACTGGAATCGAGG
GAGTTGATGGCATTTTGTCTGAAGAAGTTGAAATTGAAGTCCACAGGAGTTATTTTGGTAAATGCGGAATTTATTTGGACTGAACCACATTCCAAGAGGA
TCAAGCTCCGGGTGAGAGTTCAGAAGGAGGTCCTTCATGGTGCAATACTCGAACAAGCATATGTTATTGAGTATGTTCAGCAGGACCAAATGTGTGATTC
TTGCACAAGAGTTCAGGCCAACCCTGATCAGTGGGTTGCTGGTGTCCAGCTCCGGCAACATGTTGCTCATAGAAGAACTTTCTTTTACTTGGAGCAGCTG
ATTTTGAAGCATGATGCTGCTGCCCGTGCCATTAAAATAAAGCAAATGGATCATGGTATTGATTTTTTCTTTGCAAATCGTAGCCATGGTGTTAAATTTG
TTGACTTTGTGGGTAAAGTAGCTCCAGTAAAGAGTCGCAATGACAAGCAACTTGTTTCCCATGATACTAAGAGCAACAACTATAATTACAAACATACTTT
CTCTGTTGAAATCTCTCCAATTTGCCGTGAGGATTTAGTCTGCTTGCCTCCAAGGGTTGCTGTTAGCTTGGGGAATCTAGGTCCTCTTGTGATCTGCTCG
AAAGTGACAAATAGCATTGCTTTGTTAGATCCTTTCACCCTGAGACACTGCTTCTTGGATGCTGACCAGTACTGGAGAACACCCTTTAAGTCTCTTCTCA
CTAGCAGGCAACTTGTAGAGTATATTGTATTTGATGTGGACTTTGTTTCCCCTGAAGTTAATATTGGTGGGTCTAGATATGCTCTCGCTGATGCCACTGT
TGCTCGCATGTCAGATTTTGGGAAGAATGATACCATGTTCAACATAAAAACGCACCTGGGGCATATTTTGAAACCTGGTGATTATGCTCTTGGTTATGAT
TTACATGGAGCTAACAGTAATGACATGGAGCTTGACAAGTACAAAAATCTAGTCATTCCAGAAGCAATTTTGGTAAAGAAAAGCTATGAAGAGAAGCGCC
AGAGGAAACGAGGGAAGCCTCGTTCCTGGAAGCTAAAGTCCCTCAATATGGAGGTTGATGACACGAGAGCTAGAGGTGACCAAGAGAAGATGAACTCAGA
GTATGAACAGTTCCTGAGAGATCTGGAAGAGAACCCGGAGTTGAGGTTCAATGTATCATTGTATCGTAACAAAGAATATCAGCCTTCTGAGATGGCATCT
ATGACTGATGGGGAAGATATACCTTCCATTCCTCTAGAGGAGTTGCTTGCTGATCTTGAGATAGATGACGCCGAAGATGAGGACGAAGGCATGAGGGAAT
GA
AA sequence
>Potri.004G085700.2 pacid=42796261 polypeptide=Potri.004G085700.2.p locus=Potri.004G085700 ID=Potri.004G085700.2.v4.1 annot-version=v4.1
MCVCFVDAKLSVFLFFVLYLPDMAEEAGMFMVHQTIGSVLCCKCGIPMQPNAANMCVKCLRSEVDITEGLKKNVILLHCPECDTYLDPPSTRIRAQLESR
ELMAFCLKKLKLKSTGVILVNAEFIWTEPHSKRIKLRVRVQKEVLHGAILEQAYVIEYVQQDQMCDSCTRVQANPDQWVAGVQLRQHVAHRRTFFYLEQL
ILKHDAAARAIKIKQMDHGIDFFFANRSHGVKFVDFVGKVAPVKSRNDKQLVSHDTKSNNYNYKHTFSVEISPICREDLVCLPPRVAVSLGNLGPLVICS
KVTNSIALLDPFTLRHCFLDADQYWRTPFKSLLTSRQLVEYIVFDVDFVSPEVNIGGSRYALADATVARMSDFGKNDTMFNIKTHLGHILKPGDYALGYD
LHGANSNDMELDKYKNLVIPEAILVKKSYEEKRQRKRGKPRSWKLKSLNMEVDDTRARGDQEKMNSEYEQFLRDLEENPELRFNVSLYRNKEYQPSEMAS
MTDGEDIPSIPLEELLADLEIDDAEDEDEGMRE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G03820 nonsense-mediated mRNA decay N... Potri.004G085700
[exp]
0 1
AT2G03820 nonsense-mediated mRNA decay N... Potri.004G121500
[exp]
1.00 0.9276
AT1G80620 S15/NS1, RNA-binding protein (... Potri.003G178800
[exp]
6.92 0.7521
AT4G00660 ATRH8 RNAhelicase-like 8 (.1.2) Potri.002G157500
[exp]
10.58 0.6748
AT1G11780 oxidoreductase, 2OG-Fe(II) oxy... Potri.003G171900
[exp]
18.02 0.7215
AT1G50920 Nucleolar GTP-binding protein ... Potri.009G054000
[exp]
18.16 0.6856
AT4G32720 ATLA1 La protein 1 (.1.2) Potri.006G241800
[exp]
19.05 0.7344
AT5G36950 DEGP10 DegP protease 10 (.1) Potri.008G079900
[exp]
19.13 0.7043
AT2G16650 PRORP2 proteinaceous RNase P 2 (.1) Potri.009G145200
[exp]
22.13 0.6861
AT3G22660 rRNA processing protein-relate... Potri.015G131200
[exp]
25.98 0.6684
AT5G27640 ATTIF3B1, ATEIF... EUKARYOTIC TRANSLATION INITIAT... Potri.018G015200
[exp]
26.75 0.7307 EIF3.5

Potri.004G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.