Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16590 655 / 0 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 654 / 0 RKL1 receptor-like kinase 1 (.1) AT3G17840 646 / 0 RLK902 receptor-like kinase 902 (.1) AT3G02880 646 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 522 / 7e-179 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 478 / 6e-162 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 453 / 4e-152 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 439 / 6e-147 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G24100 385 / 3e-126 Leucine-rich repeat protein kinase family protein (.1) AT5G53320 384 / 1e-125 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130600 [exp] 1075 / 0 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 712 / 0 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.012G044600 [exp] 697 / 0 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.018G074300 [exp] 531 / 0 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 486 / 6e-165 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 480 / 5e-163 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 451 / 1e-151 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 446 / 1e-148 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 364 / 7e-118 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004040 [exp] 786 / 0 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 693 / 0 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10017996 [exp] 670 / 0 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10010973 [exp] 668 / 0 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10031337 [exp] 608 / 0 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10017756 [exp] 526 / 2e-180 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 502 / 4e-176 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10031909 [exp] 429 / 1e-145 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10033065 [exp] 423 / 4e-141 AT2G26730 768 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038828 [exp] 419 / 5e-139 AT4G23740 613 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.004G086100.1 pacid=42796719 polypeptide=Potri.004G086100.1.p locus=Potri.004G086100 ID=Potri.004G086100.1.v4.1 annot-version=v4.1 ATGAAGCCAAGACCAACTCTTTTAGTCTCAATAGCTTTCTTTGTGTTTTTCTCATTGAATTCGTTATCTACCGTGGAGTCAGATCTAGCTTCTGAGAGGG CAGCTTTGGTAACTCTACGTGATGCAGTTGGAGGCAGATCACTTTTGTGGAACCTGTCAGAGAATCCATGTCAATGGGTGGGAGTGTTTTGTGACCAAAA GAACAGTACGGTTGTTGAGTTAAGGTTACCTGCCATGGGATTTTCAGGGCAGCTGCCTGTTGCACTTGGAAATTTAACAAGTTTGCAAACACTGTCTTTG AGGTTCAATGCACTTTCAGGGCGAATTCCAGCTGATATAGGCGATATTATTTCTCTACGTAATCTTTATTTGCAAGGGAACTTCTTTTCTGGGGAGATTC CTGAATTCTTGTTCAAGTTACAGAACTTGGTAAGGTTAAACTTGGCTAATAATAACTTCTCTGGTGTGATCTCTCCAAGTTTTAATAACTTGACTAGGTT GGATACTTTGTATTTGGAGGGGAATCAGCTTACTGGTTCCATTCCTGACTTGAATTTGCCACTTGATCAATTCAATGTTTCTTTTAACAATTTGACTGGT CGTATTCCTCAGAAGTTATCTAATAAGCCTGCAAGTGCTTTTCAAGGGACCTTTCTTTGTGGGGGGCCTTTGGTTTCTTGCAATGGTACTTCAAATGGTG GTGATAAGTTGTCTGGTGGAGCAATTGCTGGGATTGTTATTGGATGTGTAATTGGATTTTTGTTAATTTTATTGATCTTGATCTTCTTGTGTCGACGAAA GAGAGACAAAAAAGAAGTAGGGTCTAAAGATGTTGAGCAGCCAAGGGAAAGTGAAGTTGAGATCCCCGGTGAGAAGGCGGCAGGGGGGAGTGGTAATGTG AGTGCAGGGCAAACTGGGGCGGTAGTGAAAAGTGAAGCTAAGAGTAGTGGGACTAAGAATTTGGTGTTCTTTGGGAACGCGGTGAGGGCATTTGATTTGG AGGACTTGTTGAAAGCTTCCGCAGAGGTTTTGGGGAAGGGAACGTTTGGTACTGCCTATAAGGCCACTTTGGATGTGGGGATGGTGGTGGCTGTGAAGAG GCTGAAGGAAGTAACGGTACCGGAGAAGGAATTTAGAGAGAAGATTGAAGTGGTTGGAAATATGAATCATGAGAATTTGGTTCCATTGAGGGCTTATTAT TATAGCCGGGATGAAAAGCTTCTTGTTCATGATTACATGCCCATGGGAAGCTTATCTGCACTTTTGCATGGAAATAAAGGTTCTGGCAGGACTCCATTGA ATTGGGAGACAAGGTCTGGCATTGCTCTTGGAGCTGCCAGAGGGATTGCATACATCCACTCTCAGGGCCCTGCAAACTCTCATGGAAACATTAAGTCATC AAATATCCTCCTCACCACTTCGTTTGAAGCCCGTGTCTCTGACTTCGGCCTTGCACACCTAGCAGGTCCTACCCCCACTCCCAACCGCATCGATGGCTAT CGTGCACCAGAAGTGACGGATGCTCGTAAAGTATCCCAAAAAGCTGATGTCTACAGCTTTGGTATATTGCTGTTGGAATTGCTCACAGGAAAGGCTCCAA CACATACGCAATTGAATGATGAGGGTGTAGACCTTCCAAGATGGGTCCAATCTGTTGTCAGAGAAGAATGGTCTGCTGAGGTGTTTGATCCTGAGCTTCT TCGATACCAGACTGTAGAGGAGGATATGGTTCAGCTCCTACAGCTTGCAAGCGATTGCACTGCTCAATATCCTGATAACCGCCCTTCAATGTCCGAGGTG AGAAGCCGAATGGAGGACCTTTGTCGTTCTAGCTCACAAGAACATGACATTATCGATGACAAGTCCTCTTAA
AA sequence Show only first row Show all	>Potri.004G086100.1 pacid=42796719 polypeptide=Potri.004G086100.1.p locus=Potri.004G086100 ID=Potri.004G086100.1.v4.1 annot-version=v4.1 MKPRPTLLVSIAFFVFFSLNSLSTVESDLASERAALVTLRDAVGGRSLLWNLSENPCQWVGVFCDQKNSTVVELRLPAMGFSGQLPVALGNLTSLQTLSL RFNALSGRIPADIGDIISLRNLYLQGNFFSGEIPEFLFKLQNLVRLNLANNNFSGVISPSFNNLTRLDTLYLEGNQLTGSIPDLNLPLDQFNVSFNNLTG RIPQKLSNKPASAFQGTFLCGGPLVSCNGTSNGGDKLSGGAIAGIVIGCVIGFLLILLILIFLCRRKRDKKEVGSKDVEQPRESEVEIPGEKAAGGSGNV SAGQTGAVVKSEAKSSGTKNLVFFGNAVRAFDLEDLLKASAEVLGKGTFGTAYKATLDVGMVVAVKRLKEVTVPEKEFREKIEVVGNMNHENLVPLRAYY YSRDEKLLVHDYMPMGSLSALLHGNKGSGRTPLNWETRSGIALGAARGIAYIHSQGPANSHGNIKSSNILLTTSFEARVSDFGLAHLAGPTPTPNRIDGY RAPEVTDARKVSQKADVYSFGILLLELLTGKAPTHTQLNDEGVDLPRWVQSVVREEWSAEVFDPELLRYQTVEEDMVQLLQLASDCTAQYPDNRPSMSEV RSRMEDLCRSSSQEHDIIDDKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	0	1
AT3G01780		TPLATE	ARM repeat superfamily protein...		Potri.001G334300 [exp]	3.00	0.9287
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	4.79	0.9373
AT3G51325			RING/U-box superfamily protein...		Potri.005G109600 [exp]	5.29	0.9230
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Potri.001G147000 [exp]	6.63	0.9108
AT1G73140		TBL31	Plant protein of unknown funct...		Potri.001G376700 [exp]	7.21	0.9331
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.018G072400 [exp]	8.12	0.9176
AT1G66810	C3HZnF	AtC3H14	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.017G119900 [exp]	9.48	0.9128
AT5G16730			Plant protein of unknown funct...		Potri.013G079000 [exp]	12.64	0.9112
AT3G07010			Pectin lyase-like superfamily ...		Potri.014G178100 [exp]	15.23	0.8607
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.008G095000 [exp]	16.88	0.9073	Pt-GRF12.2

Compare expression of checked genes

Potri.004G086100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.