Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37680 329 / 8e-117 ATARLA1A ADP-ribosylation factor-like A1A (.1) AT3G49870 292 / 4e-102 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT5G67560 290 / 1e-101 ATARLA1D ADP-ribosylation factor-like A1D (.1) AT3G49860 251 / 4e-86 ATARLA1B ADP-ribosylation factor-like A1B (.1) AT3G62290 110 / 2e-30 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT5G14670 110 / 2e-30 ATARFA1B ADP-ribosylation factor A1B (.1) AT1G23490 109 / 2e-30 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1) AT1G10630 109 / 2e-30 ATARFA1F ADP-ribosylation factor A1F (.1) AT1G70490 109 / 2e-30 ATARFA1D Ras-related small GTP-binding family protein (.1.2.3) AT2G47170 109 / 2e-30 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130500 [exp] 337 / 5e-120 AT5G37680 355 / 6e-127 ADP-ribosylation factor-like A1A (.1) Potri.009G087400 [exp] 295 / 3e-103 AT3G49870 349 / 5e-125 ADP-ribosylation factor-like A1C (.1) Potri.001G293100 [exp] 294 / 4e-103 AT3G49870 348 / 1e-124 ADP-ribosylation factor-like A1C (.1) Potri.010G152600 [exp] 109 / 2e-30 AT1G10630 365 / 4e-131 ADP-ribosylation factor A1F (.1) Potri.008G100000 [exp] 109 / 2e-30 AT1G10630 366 / 1e-131 ADP-ribosylation factor A1F (.1) Potri.013G005500 [exp] 109 / 2e-30 AT5G14670 372 / 4e-134 ADP-ribosylation factor A1B (.1) Potri.014G116500 [exp] 109 / 2e-30 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.002G191400 [exp] 109 / 2e-30 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1) Potri.005G007400 [exp] 109 / 2e-30 AT1G10630 372 / 4e-134 ADP-ribosylation factor A1F (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019259 [exp] 303 / 1e-106 AT3G49870 355 / 5e-127 ADP-ribosylation factor-like A1C (.1) Lus10012090 [exp] 302 / 3e-106 AT3G49870 353 / 2e-126 ADP-ribosylation factor-like A1C (.1) Lus10025201 [exp] 301 / 1e-105 AT3G49870 353 / 1e-126 ADP-ribosylation factor-like A1C (.1) Lus10011545 [exp] 209 / 4e-70 AT3G49870 243 / 9e-84 ADP-ribosylation factor-like A1C (.1) Lus10030884 [exp] 110 / 3e-30 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10031436 [exp] 109 / 3e-30 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 110 / 6e-30 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1) Lus10013021 [exp] 110 / 1e-29 AT5G14670 374 / 9e-133 ADP-ribosylation factor A1B (.1) Lus10013020 [exp] 111 / 3e-29 AT2G47180 336 / 3e-114 galactinol synthase 1 (.1) Lus10029144 [exp] 110 / 2e-28 AT5G14670 371 / 8e-129 ADP-ribosylation factor A1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.004G086200.1 pacid=42796313 polypeptide=Potri.004G086200.1.p locus=Potri.004G086200 ID=Potri.004G086200.1.v4.1 annot-version=v4.1 ATGGGTCTCTTGGATTCCCTTCTAAACTGGCTCAGGAGCTTATTCTTTAAACAAGAAATGGAGCTATCCCTTGTAGGCCTTCAGAATGCTGGAAAGACAT CTCTTGTTAATTCCATTGCTACAGGTGGCTACAGTGAGGACATGATTCCAACTGTTGGATTCAACATGCGAAAAGTTACAAAAGGCAATGTAACGATAAA GCTTTGGGATCTCGGAGGGCAGCGGAGGTTTCGTACAATGTGGGAGCGTTATTGTCGTGGGGTCACTGCGATTCTGTATGTAGTTGATGCAGCTGATAGA GACAGCGTTCCCATTTCAAGAAGTGAGTTACATGACCTCCTAACAAAACCTTCTTTAAGTGGAATCCCTTTGCTTGTTGTTGGCAACAAAATTGACAAGT CAGAAGCTCTGTCCAAGCAAGCTTTGGTGGATCAGCTCGGTCTTGAATCAATCGCAGATAGAGAGGTGTGCTGCTATATGATCTCATGCAAGGACTCCAT AAACATAGGCATGGTCATCGACTGGCTTATCAAGCACTCAAAAACAGCAAATTCATCAGCAGTTTGA
AA sequence Show only first row Show all	>Potri.004G086200.1 pacid=42796313 polypeptide=Potri.004G086200.1.p locus=Potri.004G086200 ID=Potri.004G086200.1.v4.1 annot-version=v4.1 MGLLDSLLNWLRSLFFKQEMELSLVGLQNAGKTSLVNSIATGGYSEDMIPTVGFNMRKVTKGNVTIKLWDLGGQRRFRTMWERYCRGVTAILYVVDAADR DSVPISRSELHDLLTKPSLSGIPLLVVGNKIDKSEALSKQALVDQLGLESIADREVCCYMISCKDSINIGMVIDWLIKHSKTANSSAV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37680		ATARLA1A	ADP-ribosylation factor-like A...		Potri.004G086200 [exp]	0	1
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	6.55	0.8979
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.009G047300 [exp]	7.74	0.8881
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007300 [exp]	11.22	0.8624
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.011G155200 [exp]	12.48	0.8632	Pt-GSNAP.1
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010800 [exp]	16.73	0.8707
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028100 [exp]	17.46	0.8811	ADF6,Pt-ADF.6
					Potri.011G057400 [exp]	18.22	0.8835
AT1G32050			SCAMP family protein (.1)		Potri.003G099300 [exp]	22.02	0.8205
AT5G42000			ORMDL family protein (.1.2)		Potri.001G086300 [exp]	22.04	0.8660
AT3G27000		ATARP2, WRM, AR...	WURM, actin related protein 2 ...		Potri.001G326600 [exp]	22.58	0.8868	Pt-ARP2.1

Compare expression of checked genes

Potri.004G086200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.