Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66250 741 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 707 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G11820 590 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 477 / 3e-165 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 369 / 2e-123 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 364 / 1e-120 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 358 / 2e-119 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 357 / 4e-118 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 355 / 4e-118 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 318 / 3e-103 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130200 [exp] 924 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 779 / 0 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.008G133200 [exp] 756 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.011G006100 [exp] 592 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 588 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 504 / 6e-176 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 492 / 2e-171 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 370 / 2e-123 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 352 / 1e-116 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002295 [exp] 816 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 813 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10013465 [exp] 760 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 733 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 701 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031456 [exp] 560 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 500 / 5e-174 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 461 / 4e-159 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 361 / 3e-120 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 342 / 6e-113 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.004G086400.1 pacid=42796343 polypeptide=Potri.004G086400.1.p locus=Potri.004G086400 ID=Potri.004G086400.1.v4.1 annot-version=v4.1 ATGTTTTGGAGTATGGAGTCTGTCTTTGTGCTTATACTTCTGCTTTCAGCAGCTGTCTCTTCTTTTGTTGCTGCTGATGATGAAGCATTCATTGGTGTTA ACATAGGAACAGACCTTTCGGACATGCCACACCCAACTCAAGTGGTAGCCCTCCTCAAGGCTCAGCAAATCAGACATGTCCGGCTCTATGATGCTGACCG TGGCATGCTAGTTGCACTTGCTAATACAGGCATTCAGGTCATGGTCTCTGTTCCCAATGAACAACTTCTGGGAATTGGTCAATCGAATTCCACTGCTGCT AATTGGGTTTCGCATAATGTGGTGGCTCATTACCCAGCTACAAACATCACAGCCATTTGTGTAGGTTCTGAGGTTTTCACAGCCGTTCCCAATGCAGCGT CAGTCCTTGTCAATGCCATGAAGTTCATTCAATCAGCCCTTGTTGCATCCAACCTAGATCGCCAAATCAAAGTTTCAACACCCCTTTCTTCCTCTATTAT CCTTGATTCCTTCCCACCATCCCAAGCCTTCTTTAACAAAACGTGGAATCCTGTTTTGATTCCCATGCTCAATTTCTTGCAGTCAACAGGGTCACACTTG ATGCTCAATATATACCCTTACTATGACTACATGCAATCAAATGGTGTAATTCCATTAGATTATGCACTCTTGAAGCCTCTTGCTCCAAACAAGGAAGCTG TTGATGCTAACACACTTGTTCACTATTCCAATGTCTTTGATGCTATGATTGATGCAACTTACTTTGCCATGGATTTCCTAAACTTTACTAACGTTCCTGT TATGGTTACTGAAACTGGCTGGCCATCAAAAGGTGATTCTAATGAGCCGGATGCAACTCTAGATAATGCCAACACTTACAACAGTAATTTGATTAGGCAT GTGCTGAACAAAACTGGAACTCCCAAACACCCTGGAATTGCTGTTAGTACATACATTTATGAGCTTTATAATGAAGATTTGAAACCCGGTCCAGTCTCAG AGAAGAATTGGGGATTGTTTAATGCAAATGGGGAGCCTGTTTACATTTTGCATCTGACCGGGTCAGGCTTAGTGTTAGCAAATGACACTACGAACCAAAC ATACTGTACTGCAAAGCAAGGTGCTGATCCAAAGATGCTGCAAGCTGCTTTGGATTGGGCATGTGGACCTGGCAAGGTTGATTGCTCTGCTATGTTGCAG GGAGAGCCATGTTACCAACCAGACAATGTGATTGCGCATGCAACTTATGCATTTAACAGTTACTATAATCAGATGGGGAAGGCTCCTGGGACATGTGACT TCAATGGTGTGGCCGCTATCACCACTACAAATCCAAGTCATGGCACTTGTGTGTTCCCAGGAAGCACTGGCAGGATGAATGGCACCATGGTAAACATTAC AGCCCCATCAATGAATTCCACGAGTGCAGCTCCTTCTGCCAGAGATCTTTACAACCTCGGTTCTACGAACTTCTTAGTGCTTCTCAGAGTTCTAATCTGT AGCATAGTTTTCTTGTAA
AA sequence Show only first row Show all	>Potri.004G086400.1 pacid=42796343 polypeptide=Potri.004G086400.1.p locus=Potri.004G086400 ID=Potri.004G086400.1.v4.1 annot-version=v4.1 MFWSMESVFVLILLLSAAVSSFVAADDEAFIGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYDADRGMLVALANTGIQVMVSVPNEQLLGIGQSNSTAA NWVSHNVVAHYPATNITAICVGSEVFTAVPNAASVLVNAMKFIQSALVASNLDRQIKVSTPLSSSIILDSFPPSQAFFNKTWNPVLIPMLNFLQSTGSHL MLNIYPYYDYMQSNGVIPLDYALLKPLAPNKEAVDANTLVHYSNVFDAMIDATYFAMDFLNFTNVPVMVTETGWPSKGDSNEPDATLDNANTYNSNLIRH VLNKTGTPKHPGIAVSTYIYELYNEDLKPGPVSEKNWGLFNANGEPVYILHLTGSGLVLANDTTNQTYCTAKQGADPKMLQAALDWACGPGKVDCSAMLQ GEPCYQPDNVIAHATYAFNSYYNQMGKAPGTCDFNGVAAITTTNPSHGTCVFPGSTGRMNGTMVNITAPSMNSTSAAPSARDLYNLGSTNFLVLLRVLIC SIVFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66250			O-Glycosyl hydrolases family 1...		Potri.004G086400 [exp]	0	1
AT4G02800			unknown protein		Potri.002G053100 [exp]	4.12	0.9735
AT5G16250			unknown protein		Potri.013G127900 [exp]	4.58	0.9683
					Potri.006G190400 [exp]	5.65	0.9722
AT3G02120			hydroxyproline-rich glycoprote...		Potri.017G094200 [exp]	7.48	0.9680
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.008G093800 [exp]	10.48	0.9657	SNAP30.2
AT5G16250			unknown protein		Potri.010G179300 [exp]	11.31	0.9575
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Potri.006G035200 [exp]	12.48	0.9649
AT2G16270			unknown protein		Potri.001G289100 [exp]	12.64	0.9641
AT5G66230			Chalcone-flavanone isomerase f...		Potri.007G057800 [exp]	13.49	0.9645
AT5G16250			unknown protein		Potri.019G113300 [exp]	14.07	0.9614

Compare expression of checked genes

Potri.004G086400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.