Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37710 600 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT3G49050 479 / 4e-167 alpha/beta-Hydrolases superfamily protein (.1) AT4G00500 442 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G42450 72 / 3e-13 alpha/beta-Hydrolases superfamily protein (.1) AT4G16070 63 / 2e-10 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) AT3G14075 60 / 3e-09 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G130000 [exp] 788 / 0 AT5G37710 609 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G142700 [exp] 497 / 1e-174 AT3G49050 654 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G145900 [exp] 490 / 8e-172 AT3G49050 631 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G083600 [exp] 460 / 8e-160 AT4G00500 629 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G159200 [exp] 458 / 2e-159 AT4G00500 619 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G222000 [exp] 70 / 2e-12 AT2G42450 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G067900 [exp] 63 / 2e-10 AT3G14075 752 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.010G005800 [exp] 59 / 6e-09 AT4G16070 715 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2) Potri.008G211200 [exp] 54 / 2e-07 AT4G16070 751 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039240 [exp] 466 / 8e-163 AT3G49050 624 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10027485 [exp] 463 / 4e-161 AT3G49050 616 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10037847 [exp] 450 / 4e-156 AT4G00500 636 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000445 [exp] 404 / 4e-140 AT5G37710 385 / 1e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10010983 [exp] 402 / 1e-139 AT5G37710 384 / 3e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10030391 [exp] 391 / 2e-133 AT3G49050 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000444 [exp] 213 / 2e-67 AT5G37710 191 / 5e-60 alpha/beta-Hydrolases superfamily protein (.1) Lus10024878 [exp] 72 / 3e-13 AT2G42450 618 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10000708 [exp] 70 / 2e-12 AT2G42450 610 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10015680 [exp] 69 / 3e-12 AT3G14075 744 / 0.0 Mono-/di-acylglycerol lipase, N-terminal;Lipase, class 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3) CL0028 [poplar] [flax] AB_hydrolase PF03893 [poplar] [flax] Lipase3_N Lipase 3 N-terminal region
Representative CDS sequence Show only first row Show all	>Potri.004G086900.1 pacid=42795543 polypeptide=Potri.004G086900.1.p locus=Potri.004G086900 ID=Potri.004G086900.1.v4.1 annot-version=v4.1 ATGTTTTTCTGTTGTGGAGTAGAATCTGTAGTTATACTAGGCTTCGGTCGCTGGGCTTGGAAGCGTTGCACATACATTGGTGCTAATGACAGTGCAAACT GGACCTTGGCAACCCCAGAAGAGTTTGAACCAATCCCTCGTATGTGTCGTTTAGTTCTTGCTGTCTACGAATCAGATCTTCACAACCCTCAATTCATTCC TCAACATGGCTACCGCTTAAACCCAGATAGGGTTATTAAGCGTGTAACTTATGAACAAACACAAGGGCGTGCCCCTCCTTATATAATTTACATAGATCAT GATCATAAAGAGATTGTTTTGGCGATTCGGGGATTGAATTTATACAAAGAGAGTGATTATAAAACGTTGTTAGATAATAGGTTAGGAATGCAGATGTTTG ATGGAGGTTTTGTGCATCATGGGTTGTTGAAGTCTGCTGTTTGGTTATTGAATGAAGAAGGGGAGACATTGAAGAGGTTGTGGGAGGAGAATGGGAAAGT GTATGATATGGTTTTTGCTGGACATTCTTTAGGGTCTGGCGTAGCGGCTTTGTTAACTGTTATTGTGGTTAATCATAGAGATAAGTTAGGAGGGATTCCT AGGGAGAAGATTAGGTGTTATGTTATGGCTCCAGCGAGGTGTATGTCACTTAATTTGGCCGTTAAGTATGCTGATGTTATTCACTCTATAATTTTGCAGG ATGATTTCTTACCAAGAACAGCTACTCCATTGGAAGATATCTTTAAGTCAATCTTCTGCTTGCCCTGCTTGTTGTTTTTGGTTTGCTTGAGAGATACCTT CATTCCAGAAGGTAGAAAGCTTAGAGATCCAAGAAGACTTTATGCTCCTGGACGAATGTATCATATTGTAGAGAGAAAATTTTGCAGATGTGGGAGGTTT CCACCGGAGGTCAGAACTGCCATTCCTGTAGATGGAAGATTTGAACACATTGTCCTATCATGTAATGCCACATCTGATCATGGAATTATTTGGATAGAAA GGGAATCACAGAAAGCCTTGGAGAAAATGAAGGAAATCAGTTCTGAAACCATCACAACTCCTCCGGATGTACAAAAATTTGAAAGGATGCAGACAATTGA ACAAGAACACAGGGATGCATTGGAAAGAGCTGTCAGTTTAAATATTCCTCATGCTGTGGCCACCCCTGATGCAGAGCCCTGCATGGATAATGATGCAGAA CCCTGCATGGATAATGGAACAGTGCCTTCCCAGTCCGAGGGTGAACAAGCCTCGAAAACTAAATCTACTTCCAGTGGCGGAAAGACTAACTGGGATGAAG TGGTTAAAAAACTTTTCAAGAAGGGCGAGTCGGGACACCTTGTCTTAAACAAAGATGTAACTGCTCTAAATAACATTTCTGTTGTTCAACCTTCGTGA
AA sequence Show only first row Show all	>Potri.004G086900.1 pacid=42795543 polypeptide=Potri.004G086900.1.p locus=Potri.004G086900 ID=Potri.004G086900.1.v4.1 annot-version=v4.1 MFFCCGVESVVILGFGRWAWKRCTYIGANDSANWTLATPEEFEPIPRMCRLVLAVYESDLHNPQFIPQHGYRLNPDRVIKRVTYEQTQGRAPPYIIYIDH DHKEIVLAIRGLNLYKESDYKTLLDNRLGMQMFDGGFVHHGLLKSAVWLLNEEGETLKRLWEENGKVYDMVFAGHSLGSGVAALLTVIVVNHRDKLGGIP REKIRCYVMAPARCMSLNLAVKYADVIHSIILQDDFLPRTATPLEDIFKSIFCLPCLLFLVCLRDTFIPEGRKLRDPRRLYAPGRMYHIVERKFCRCGRF PPEVRTAIPVDGRFEHIVLSCNATSDHGIIWIERESQKALEKMKEISSETITTPPDVQKFERMQTIEQEHRDALERAVSLNIPHAVATPDAEPCMDNDAE PCMDNGTVPSQSEGEQASKTKSTSSGGKTNWDEVVKKLFKKGESGHLVLNKDVTALNNISVVQPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.004G086900 [exp]	0	1
AT1G20670			DNA-binding bromodomain-contai...		Potri.005G252200 [exp]	1.41	0.7548
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	2.23	0.7859
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014338 [exp]	8.83	0.7436
AT5G38700			unknown protein		Potri.014G123400 [exp]	8.94	0.7419
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	9.79	0.7115
AT3G59090			unknown protein		Potri.002G058500 [exp]	12.00	0.6630
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	13.96	0.7412
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.005G007200 [exp]	14.69	0.7029	EXT.9
AT1G78280			transferases, transferring gly...		Potri.002G099400 [exp]	16.24	0.7031
AT5G36930			Disease resistance protein (TI...		Potri.007G099700 [exp]	17.14	0.7037

Compare expression of checked genes

Potri.004G086900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.